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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACTCAAGAAGTGTATGTTGCTGCATACAAGAGCGATGAGTTTCCAGCATTTTTCACAGAAAAAAGTGGCTGTAAGgtgcaaaattgttcattatcactgaactcaatcaggtgcttctgcatagatatttagttctgatgtggatatattgacttctttag

Basic information

species Arabidopsis thaliana
transcript AT1G50510.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G50510.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv06s0009g02380.t01 (Vitis vinifera), 5'ss of exon 8
GAAACTCAAGAAGTGTATGTTGCTGCATACAAGAGCGATGAGTTTCCAGCATTTTTCACAGAAAAAAGTGGCTGTAAGgtgcaaa-attgttcattatcactgaactcaatcaggtgcttctgcatagatatttagttctgatgtggatatattgacttctttag---------------
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GAAACTCAAGGAGTATGTGTTGCTGCTTATAAGACTAATGAATTTCCAGCATTTTTCACAGAAAAAAGTGGCAGCAAGgtattaatgttggactctgtctcagcatactgttatatgttagagtcgaacttactgttgcttcagcaagttaat--attgctttggcattgttttgtccca