1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACTTGCGGCATACTTGTTTACACATAACAAGAAGTTGAAAGAGAGATTCGCAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCATgtaagaaagacactagctaaaatacattgcactagtagcattttatcattacacaaaagcgttatcatcatccgatattttgcag
species | Arabidopsis thaliana |
transcript | AT1G44170.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCAT CTTGCACTTCACACAEST: gi|86074378|gb|DR370135.1|DR370135
genomic: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCATgtaagaaaga ... tattttgcagCTTGCACTTCACACA
EST: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCAT CTTGCACTTCACACATTGCCATTCGGAGGAGTTGGTGAAAGTGGAATGGGTEST: gi|86076863|gb|DR372620.1|DR372620
genomic: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCATgtaagaaaga ... tattttgcagCTTGCACTTCACACATTGCCATTCGGAGGAGTTGGTGAAAGTGGAATGGGT
EST: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCAT CTTGCACTTCACACATTGCCATTCGGAGGAGTTGGTGAAAGTGGAATGGGTEST: gi|86029395|gb|DR325148.1|DR325148
genomic: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCATgtaagaaaga ... tattttgcagCTTGCACTTCACACATTGCCATTCGGAGGAGTTGGTGAAAGTGGAATGGGT
EST: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCAT CTTGCACTTCACACATTGCCATTCGGAGGAGTTGGTGAAAGTGGAATGGGTEST: gi|116465913|gb|EG508505.1|EG508505
genomic: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCATgtaagaaaga ... tattttgcagCTTGCACTTCACACATTGCCATTCGGAGGAGTTGGTGAAAGTGGAATGGGT
EST: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCAT CTTGCACTTCACACATTGCCEST: gi|116465916|gb|EG508508.1|EG508508
genomic: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCATgtaagaaaga ... tattttgcagCTTGCACTTCACACATTGCC
EST: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCAT CTTGCACTTCACACATTGCCEST: gi|86084360|gb|DR380119.1|DR380119
genomic: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCATgtaagaaaga ... tattttgcagCTTGCACTTCACACATTGCC
EST: CAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCAT CTTGCACTTCACACATTGCCATTCGGAGGAGTTGGTGAAAGTGGAATGGGTEST: gi|116465923|gb|EG508515.1|EG508515
genomic: CAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCATgtaagaaaga ... tattttgcagCTTGCACTTCACACATTGCCATTCGGAGGAGTTGGTGAAAGTGGAATGGGT
EST: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCAT CTTGCACTTCACACATTGCCEST: gi|86080652|gb|DR376409.1|DR376409
genomic: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCATgtaagaaaga ... tattttgcagCTTGCACTTCACACATTGCC
EST: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCAT CTTGCACTTCACACATTGCCATTCGGAGGAGTTGGTGAAAGTGGAATGGGT
genomic: CAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCATgtaagaaaga ... tattttgcagCTTGCACTTCACACATTGCCATTCGGAGGAGTTGGTGAAAGTGGAATGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTGCGGCATACTTGTTTACACATAACAAGAAGTTGAAAGAGAGATTCGCAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCATgtaagaaagacactagctaaaatacattgcactagtagcattttatcattacacaaaagcgttatcatcatccgatattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT