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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATAAGCCTGCAAATGACCCGCCAATCAATCATAAAAAACTGGGCTCTGCTGGTCTTGCCTTGCATTACGCAAACATCATTACTCAAATTGATACTCTTgtaagtatattattcttttttatcacttagttttactttcaatgtttggcctgttgtccaaactctaggttcctgggattgtaaatcgtttgtttctcgt...

Basic information

species Arabidopsis thaliana
transcript AT1G34320.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 5'ss of exon 9
TGATAAGCCTGCAAATGACCCGCCAATCAATCATAAAAAACTGGGCTCTGCTGGTCTTGCCTTGCATTACGCAAACATCATTACTCAAATTGATACTCTTgtaagtatattattcttttttatcacttagttttactttcaatgtttggcctgttgtccaaactctaggttc-ctgggattgtaa-atcgtttgtttctcgt-
   | |  |  || | || ||  | |   | || || | | ||||  | || || ||||| |||||||| ||||| ||||| | ||| ||||||||||||||||||  |  |    |  ||| || |    |  | ||| |||   |    |||  || | |   ||  |   |    |||  || | |     | ||  |  
CAGTGAAGCGCCACAAGAACCAGCTAAACACCACAATAGATTGGGACCAGCAGGCCTTGCATTGCATTATGCAAATATCATCAATCAGATTGATACTCTTgtaagttcacaaaatctgcttaacattc---taaatttttaattactattttgtcatctagaagataaatcaaccaatatttcaacaccagcaatgtcatgag

upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G046846_T01 (Zea mays), 5'ss of exon 9
-TGATAAGCCTGCAAATGACCCGCCAATCAATCATAAAAAACTGGGCTCTGCTGGTCTTGCCTTGCATTACGCAAACATCATTACTCAAATTGATACTCTTgtaagtatat----tattcttttttatcacttagttt-tactttcaatgtttggcctgttgtcca---aactctaggttcctgggattgta--aatcgttt-gtttctcgt---------------------------------------------------------------------------------
  |  |||  |   |   |||  |||| | | | ||| | | ||||  | || ||||||||  ||||||| ||||| ||||| | ||| ||||||||||||||||||  |     |   || || |||   ||  | | |    |  ||  |     | |  ||      ||     |||| |||| |||||  | | |||| || |  |                                                                                   
CAGTGAAGAATCACAGGAACCTACCAAACGA-CGTAATAGATTGGGTCCAGCAGGTCTTGCACTGCATTATGCAAATATCATCAGTCAGATTGATACTCTTgtaagttcacaggatccactgttctattgttttctctgtgtcctgcattatgcaaatatcatcagtttgacctacagttcatggggttgtactagtagttttgtgtgccacacaaattgaatttgttgtgctaagaaaatcattttttttgtttcttttctggtagcctaacaagggttgatcaattgacag

upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA20G31400.1 (Glycine max), 5'ss of exon 11
TGATAAGCCTGCAAATGACCCGCCAATCAATCATAAAAAACTGGGCTCTGCTGGTCTTGCCTTGCATTACGCAAACATCATTACTCAAATTGATACTCTTgtaagtatattattcttttttatcacttagttttactttcaatgtttggcctgttgtccaaactctaggttcctgggattgt-aaatcgt-ttgtttctcgt
||||||||| || || ||  | | |  ||| ||||| ||  |||| |||||||||||||| |||||||| || ||||| || |||||||||||||||||||| |||  |  ||| |  || |  |  |  |   |  || | | ||      | ||| |||| | |      ||  | |||| |  |  | ||||||||   
TGATAAGCCAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGGTCTGCTGGTCTTGCTTTGCATTATGCGAACATTATCACTCAAATTGATACTCTTgtgagttaaggattttacttgaataaatc-tacaatatttattattgtcttggatgttcaaattatgttagtctctgtttgtcatgtaatattgtttctta-

upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA10G36210.1 (Glycine max), 5'ss of exon 11
TGATAAGCCTGCAAATGACCCGCCAATCAATCATAAAAAACTGGGCTCTGCTGGTCTTGCCTTGCATTACGCAAACATCATTACTCAAATTGATACTCTTgtaagtatattattct-tttttatcacttagttt-tactttcaatgtttggcct-gttgtccaaactctaggttcctgggattgtaaatcgtttgtttctcgt
||||||||  || || ||  | | |  ||| ||||| ||  |||| |||||||||||||| |||||||| || ||||| || ||||||||||||||||| || ||| ||  ||| |  ||  || || || | | || | |   |   || | | |  || || | | |   ||   |    |||   | || ||  | | ||
TGATAAGCAAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGATCTGCTGGTCTTGCTTTGCATTATGCGAACATTATCACTCAAATTGATACTCTCgtgagtttaggattttacttaaattacataatctctattatttgttactgtcttagaagttcatattatc--ttttagtctctgttggttgtgtgacttt-gt

upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 8
TGATAAGCCTGCAAATGACCCGCCAATCAATCATAAAAAACTGGGCTCTGCTGGTCTTGCCTTGCATTACGCAAACATCATTACTCAAATTGATACTCTTgtaagtatattattcttttttatcacttagttttactttcaatgtttggcctgttgt-ccaaactctaggttcctgggattgtaaatcgtttgtttctcgt
|||||| ||    || |   |  ||| ||| ||||||||  |||||  |||||||||||| || ||||| || || || || |||||||||||||||||||| ||| |   | |   ||  ||    |  ||    |  || | |||      | ||       |||   ||   || | | | | |   |  | || |  
TGATAAACCAATCAAAGGTTCTACAAACAACCATAAAAAGTTGGGCAATGCTGGTCTTGCATTACATTATGCGAATATTATCACTCAAATTGATACTCTTgtgagtttgccacttcattcaattttgtgtttcctttaccattcttttatgactagtatttgtttctcaattttcggaactatgagtgaatgctatcgct-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164045312|gb|ES000671.1|ES000671
EST:     TTACGCAAACATCATTACTCAAATTGATACTCTT                         GTGTCCCGGTCTAGCACTATGCCTGCAAGCACAAGAGATGCTTTGTACCAA
genomic: TTACGCAAACATCATTACTCAAATTGATACTCTTgtaagtatat ... ctatgagtagGTGTCCCGGTCTAGCACTATGCCTGCAAGCACAAGAGATGCTTTGTACCAA