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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCCGCTGAAAGCTGTTAACGTAATGCATACTGTGGCGTTGAGAACCGAGGCAAGTCTACCTGTCAGAACCTCGGCATCCCGTACCACTGCTTACAAGgtactcacacattcctcatatcagaaatattatatatgatatgttaggcaaatgtgaatgtgttaataatgatatttttgttacag

Basic information

species Arabidopsis thaliana
transcript AT1G32440.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G32440.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv02s0012g01170.t01 (Vitis vinifera), 5'ss of exon 9
GTTTCCGCTGAAAGCTGTTAACGTAATGCATACTGTGGCGTTGAGAACCGAGGCAAGTCTACCTGTCAG---AACCTCGGCATCCCGTACCACTGCTTACAAGgtactcacacattcctcatatcagaaatattatatatgat--atgttaggcaaatgtgaatgtg---ttaataatgatatttttgttacag---------
   |||| ||||||||||||| ||||||||||||||||| ||||| || ||| | |||||| |   |||   |||  |  ||   |  || |   | ||||||| |   |    ||      |  ||  |||  || | |  |  |||||| |    |  ||||||    ||| |      |  |   ||| |          
---TCCGTTGAAAGCTGTTAAAGTAATGCATACTGTGGCATTGAGGACTGAGTCTAGTCTATCAACCAGCACAACTCCTCCAAGTCAAACTATACCCTACAAGgcaagtattggttatgataacaagccatagcatgtttccttaatgttatgaggtttggaatgtccatttagtcccagaacatcatttatatattttgaac