Sequence
atgc intronic sequence ATGC exonic sequenceAATTATACTGGTGACAAGGAAATGCTTGGAAAGTGTGAACAGgtttgtttagttgctaaagcgttggattatacttgtatatcatctctgctctgactcttaaccttgcaaatgtaccag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G31810.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G31810.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA04G14770.1 (Glycine max), 5'ss of exon 9
AATTATACTGGTGACAAGGAAATGCTTGGAAAGTGTGAACAGgtttgttt--agttgctaaagcgttggatta-tacttgtatatcatctctgctctgactcttaaccttgcaaatgtaccag-----
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AATTATACAGGAAACAAGGAAATGCTTGGAAAGTGTGAACAGgttttttccctgatactctctagtcaaatgagtccttgctaattatttatgtt---gattttaacattttttttttatctcatcag
upper sequence: AT1G31810.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA09G34830.1 (Glycine max), 5'ss of exon 9
AATTATACTGGTGACAAGGAAATGCTTGGAAAGTGTGAACAGgtttgtttagttgctaaagcgttggattat-acttgtatatcatctctgctctgactctta-accttgcaaatgtaccag
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AATTATACAGGAAACAAGGAAATGCTTGGAAAGTGTGAACAGgttt-tttccctgatact-ctttagtcaatgagttgttaattatttgtgtt--gattttaacatttttttatctcatcag
upper sequence: AT1G31810.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 9
AATTATACTGGTGACAAGGAAATGCTTGGAAAGTGTGAACAGgtttgtttagttgctaaagcgttggat-tatacttgtatatcatctctgctctgactcttaaccttgcaaatg-taccag
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AATTACCCTGGAGACAAGGCAATGCTTGGAAAGTGTGAGCAGgtgatttctgatgcctggaatatgaatgcatgccca-atcctgtatcttgattgttaacaaacttcatgtttgatatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86044354|gb|DR340109.1|DR340109EST: AATTATACTGGTGACAAGGAAATGCTTGGAAAGTGTGAACAG TTTTTCATGGAACTAATGAAGGTTCCACGTATAGAAGCAAAGTTACGAGTG
genomic: AATTATACTGGTGACAAGGAAATGCTTGGAAAGTGTGAACAGgtttgtttag ... aatgtaccagTTTTTCATGGAACTAATGAAGGTTCCACGTATAGAAGCAAAGTTACGAGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTATACTGGTGACAAGGAAATGCTTGGAAAGTGTGAACAGgtttgtttagttgctaaagcgttggattatacttgtatatcatctctgctctgactcttaaccttgcaaatgtaccag
- - - - - - - AAGGAA