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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGCTGTTGGGAAGCTTTTTAGGAAAATGCTCTGGAAGCATAAGATCTGTGGTTAGACATCCACAGCATCAAGTGATAGCTTCTTGCGgtaagattcattatcacaacttcaacgtccatatgccgtaacccgtaacaacaatctcatttgtgttgttttatttaattgttcaacaatttcatctgtttttcttttaattgaattgtctag

Basic information

species Arabidopsis thaliana
transcript AT1G29320.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164003345|gb|ES188558.1|ES188558
EST:     TCAAGTGATAGCTTCTTGCG                         GGCTGGTACCGTATATTTACGTGTTTATGACGTTAAGACACGCCAGCTCAT
genomic: TCAAGTGATAGCTTCTTGCGgtaagattca ... aattgtctagGGCTGG-ACCG-ATATTTACGTGTTTATGACGTTAAGACACGCCAGCTCAT
EST: gi|164004805|gb|ES160169.1|ES160169
EST:     TCAAGTGATAGCTTCTTGCG                         GGCTGGACCGATATTTACGTGTTTATGACGTTAAGACACGCCAGCTCATTT
genomic: TCAAGTGATAGCTTCTTGCGgtaagattca ... aattgtctagGGCTGGACCGATATTTACGTGTTTATGACGTTAAGACACGCCAGCTCATTT
EST: gi|163988561|gb|ES208782.1|ES208782
EST:     CATCCACAGCATCAAGTGATAGCTTCTTGCG                         GGCTGGACCGATATTTACGTGTTTATGACGTTAAGAC
genomic: CATCCACAGCATCAAGTGATAGCTTCTTGCGgtaagattca ... aattgtctagGGCTGGACCGATATTTACGTGTTTATGACGTTAAGAC