Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGAGATTCCTGATATCATTTTCTGATGTTCTTGACCTATGGCCTTTTACACTGGATGAGTTTATTCAGGCTTTTCATGACTATgtaagtcgctctttagtacctatagcctgttttctcgtgttctatagttgtttctttcatttcattgttcgtgctctgtatttgataaagatcctattgtag

Basic information

species Arabidopsis thaliana
transcript AT1G28420.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G28420.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA13G24370.1 (Glycine max), 5'ss of exon 9
GTTTGGAGATTCCTGATATCATTTTCTGATGTTCTTGACCTATGGCCTTTTACACTGGATGAGTTTATTCAGGCTTTTCATGACTATgtaagtcgctctttagt--acctatagcctgttttctcgtgttctatagttgtttctttcatttcattgttcgtgctctgtatttgataaagatcctattgtag
|||||||||||  | ||    ||| |||||||||| ||  ||||| ||||||| || ||||||||| |||| || |||||||||||||||||||  |||  | |   |   |    |  |       |||  |   || |||  | || |   ||| || | ||  || ||  |  |  || ||||   ||
GTTTGGAGATTTTTTATTAACTTTGCTGATGTTCTGGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATgtaagtcagtctggacttcgctggtgatttcatgctatcagtttaactatttttttgtgcactc--ttgctcattctgggtgttcaa--atcattctatcccag

upper sequence: AT1G28420.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA07G32180.1 (Glycine max), 5'ss of exon 10
GTTTGGAGATTCCTGATATCATTTTCTGATGTTCTTGACCTATGGCCTTTTACACTGGATGAGTTTATTCAGGCTTTTCATGACTATgtaagtcgctctttagtacctatagcctgttttctcgtgttctatagttgtttctttcatttcattgttcgtgctctgtatttgataaagatcctattgtag
|||||||||||  ||||    ||| |||||||||| ||  ||||| ||||||| || ||||||||| |||| || |||||||||||||| ||||  |||  | |     | ||  ||  | || || | |    ||   | |||  |    |  | |    ||||  | |   ||  ||  |||   ||
GTTTGGAGATTTTTGATCAACTTTGCTGATGTTCTAGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATgtgagtcagtctagact-----ttgctggtgatttcatgctatcagtttaacttttttgtgcactcttgctcattctgggtgttcaaatcattttatcccag

upper sequence: AT1G28420.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA13G30860.1 (Glycine max), 5'ss of exon 9
GTTTGGAGATTCCTGATATCATTTTCTGATGTTCTTGACCTATGGCCTTTTACACTGGATGAGTTTATTCAGGCTTTTCATGACTATgtaagtcgctctttagtacctatagcctgttttctcgtgttctatagttg--tttctttcatttcattgttcgtgctctgtatttgat---aaagatcctattgtag
|||||||||||| ||||  | ||| ||||||| |||||  ||||||||||||| || || |||||| | ||||| ||||| |||||||| |||   |||   |   ||        |||| |  ||      |  ||  ||||| |     | ||| || |  |   | ||  ||   ||  ||   |||| ||
GTTTGGAGATTCTTGATTACTTTTGCTGATGTACTTGATTTATGGCCTTTTACTCTTGACGAGTTTGTACAGGCATTTCACGACTATgtgagtaaatct--ggcctctgcttttgattttgtgctgcagctgaactggatttctgtgcaccctttgctcattatgcatgttcaattcaaaccatttgattgcag

upper sequence: AT1G28420.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv10s0003g00290.t01 (Vitis vinifera), 5'ss of exon 9
GTTTGGAGATTCCTGATATCATTTTCTGATGTTCTTGACCTATGGCCTTTTACACTGGATGAGTTTATTCAGGCTTTTCATGACTATgtaagtcgctctttagtacctatagcctgttttctcgtgttctatagttgtttctttcatttcattgttcgtgctctgtatttgataaagatcctattgtag------
|| ||||||||  | ||  | ||| | ||||| ||| |  ||||||||||||| || ||||||||| | || ||||||||||||||||| |||    | | ||    |         |||   |  |  ||   |  |||||    || | || |   |||  | |     ||    || | ||  ||       
GTCTGGAGATTTTTAATCACTTTTGCCGATGTGCTTCAGTTATGGCCTTTTACTCTTGATGAGTTTGTCCAAGCTTTTCATGACTATgtgagttctccatgaggtttttgttttcaattttatgcatattaatttaatttctgcttttgccttctctttgccttttcacatatttctataccatattaatctcag