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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACCAAAGTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAAGTTTTAGgtaaaaatttggctctagtgattgtttttataggacacttggctcgtaagctcatcaaaaatgtcaaataatggcag

Basic information

species Arabidopsis thaliana
transcript AT1G28100.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19799902|gb|AU231192.1|AU231192
EST:     GTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAAGTTTTAG                         TGCCAATACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCA
genomic: GTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAAGTTTTAGgtaaaaattt ... ataatggcagTGGCAATACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCA
EST: gi|86079751|gb|DR375508.1|DR375508
EST:     GTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAAGTTTTAG                         TGGCAATACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCA
genomic: GTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAAGTTTTAGgtaaaaattt ... ataatggcagTGGCAATACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCA
EST: gi|86081816|gb|DR377575.1|DR377575
EST:     GTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAAGTTTTAG                         TGGCAATACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCA
genomic: GTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAAGTTTTAGgtaaaaattt ... ataatggcagTGGCAATACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCA