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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTAATTGGGCATTTTGACCTGGATCCAAACCGTGTTTTCGACATTgtaagttttcactgttgcttctgtcatatttttgtttgatattgcataacgcatcaatctgtccttcccgattagtaataatgtaccctttgtttttgatgaatag

Basic information

species Arabidopsis thaliana
transcript AT1G24706.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G24706.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os01g68810.1 (Oryza sativa), 5'ss of exon 8
TCATTAATTGGGCATTTTGACCTGGATCCAAACCGTGTTTTCGACATTgtaagttttcactgttgcttctgtcatatttttgtttgatattgcataacgcatcaatctgtccttcccgattagtaataatgtaccctttgtttttgatgaatag
||||| |||||||||||||||||||| ||||| ||||| || || ||||| |||||| | |  ||||     ||  ||||||||    |||| |    |    |   |||            ||| | ||||     |||| ||     |    
TCATTGATTGGGCATTTTGACCTGGACCCAAATCGTGTGTTTGATATTgtgagttttgatt--tgctgtc--cacttttttgttatgcattgtactgtgtgaaagcgtgttaccgaaagcatgtagtgatgttattcttgtattctgctag---

upper sequence: AT1G24706.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA08G05320.1 (Glycine max), 5'ss of exon 5
TCATTAATTGGGCATTTTGACCTGGATCCAAACCGTGTTTTCGACATTgtaagttttcactgtt-gcttctgtcatatttttgtttgatattgc---ataacgcatcaatctgtccttcccgattagtaataatgtaccctttgtttttgatgaatag
||||||||||| ||||||||  |||||||||| || |||||||| ||||||||||    || || | ||   |  |||| ||  || ||||| |   |||| |  |   | |    ||     |   || | |||||  |||| || |          
TCATTAATTGGCCATTTTGATTTGGATCCAAATCGCGTTTTCGATATTgtaagttggatcttttagattgatttttattattaattcatatttccatataaagttttcgtttcatgttttatctatctactgatgtatgcttttttatcag-------

upper sequence: AT1G24706.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA05G34330.1 (Glycine max), 5'ss of exon 8
TCATTAATTGGGCATTTTGACCTGGATCCAAACCGTGTTTTCGACATTgtaagttttcactgtt-gcttctgtcatatttttgtttgatatt---gcataacgcatcaatctgtccttcccgattagtaataatgtaccctttgtttttgatgaatag
||||||||||| ||||||||  |||||||||| |||||||| || ||||||||||    || || | ||   |  |||| ||  || | |||     |||| |  |   | |    ||     | | || | |||||   ||| |             
TCATTAATTGGCCATTTTGATTTGGATCCAAATCGTGTTTTTGATATTgtaagttggatctttttgattgatttttattattaattcacatttctatataaagtttttgtttcatgttttatttaactactgatgtatgttttatcag----------

upper sequence: AT1G24706.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv01s0011g06120.t01 (Vitis vinifera), 5'ss of exon 8
TCATTAATTGGGCATTTTGACCTGGATCCAAACCGTGTTTTCGACATTgtaagttttcactgttgcttctgtcatatttttg-----tttgatattgcata-acgcatcaatctgtc-----cttcccgattagtaataatgtac---cctttgtttttgatgaatag-----
||||||||||| || ||||| ||||| ||||||||||| || || |||||||||| | | | ||  || | | ||   | ||     |||||| || | |  | |  |  |  |||       ||   |||||| | |  | ||      ||  |  |   | |||       
TCATTAATTGGACACTTTGATCTGGACCCAAACCGTGTCTTTGATATTgtaagttgtaaattttatttttctaattgatgtgcctattttgatgtttcttgtatgtgttcaattgtgaaggatttgatgattagaattggtatatggttgttgatcatccttcaatgcctcag