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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGAAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATATCAAAGGATCTTGCCACATACATATCTAACAACCAgtaagtgaccaactttatggtttttggattttcgacaaggtaagatatgttttaccaagggaaatgagtatcaaccaaacataacatttgatgtttgacttcgcag

Basic information

species Arabidopsis thaliana
transcript AT1G22015.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22015.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os09g27950.1 (Oryza sativa), 5'ss of exon 9
TTTGGAAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATATCAAAGGATCTTGCCACATACATATCTAACAACCAgtaagtgaccaactttatggtttttggattttc-gacaaggtaagatatgttttaccaagggaaatgagtatcaaccaaacataacatttgatgtttgacttcgcag
| ||||| ||||| ||||| || ||||| |||||||| ||||| || || ||||| |||||||| |||||||| |||||||||||||| || | ||||| |||||     |   |    |    ||  | ||| |||||  ||   |   ||||||  |     ||   ||   |  |  | |           | | ||   |   
TCTGGAAGTTTGGCGAAGACGGGAACAAGTATTTCCGCCATGCCACTGGGCAGATATATGCCATCTCAAAGGACCTTGCCACATACATCTCGATCAACCGgtaagcctagagaatggctgcacatgattcttcagacaaaata---ttcattttactga-----attgttactgat-actcttgtgtcccaccatataacccag---

upper sequence: AT1G22015.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os02g35870.1 (Oryza sativa), 5'ss of exon 9
TTTGGAAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATATCAAAGGATCTTGCCACATACATATCTAACAACCAgtaagtgaccaactttatggtttttggattttcgacaaggtaagatatgttttaccaagggaaatgagtatcaaccaaacataacatttgatgtttgacttcgcag
  ||||||||||| || ||||| |||||||| ||||| |||||||| || ||||| || || || ||||| || || || || ||||| || | ||||||||| ||  || |    |||   |    | |    |  |   || | ||  |  |        |||||   |    ||                             
ACTGGAAATTTGGGGAGGAAGGGAACAAATACTTCCGTCATGCTACTGGGCAGATATACGCGATTTCAAAAGACCTCGCGACCTACATTTCAATCAACCAgtatgtttcctatgccatgccatgcaaaatccttatgaccgaaaaaatact--aatgtttccaatgatgttttgtcag----------------------------

upper sequence: AT1G22015.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G013079_T01 (Zea mays), 5'ss of exon 9
TTTGGAAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATATCAAAGGATCTTGCCACATACATATCTAACAACCAgtaagtgaccaactttatggtttttggattttcgacaaggtaagatatgttttaccaagggaaatgagtatcaaccaaacataacatttgatgtttgacttcgcag
  ||||||||||| || ||||| || ||||| ||||| ||||| ||||| ||||| |||||||| || || ||||| || || || || || | ||||||||| ||     | || ||| |  |   ||       |  | |   | ||||   | || ||  |         || ||  ||  || | ||| |||  |       
ACTGGAAATTTGGGGAGGAAGGAAATAAATACTTCCGTCATGCCACGGGGCAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCAgtatgt---ttaattcatgttcatgacat-------acagaagtgtctgttcatctaaagggga---------actaatgatgccagt-gatatttatcag-----

upper sequence: AT1G22015.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv07s0031g03090.t01 (Vitis vinifera), 5'ss of exon 9
TTTGGAAATTTGGAGAAGAAGGTAACAAATATTTCCGACATGCTACGGGACAGATTTATGCCATATCAAAGGATCTTGCCACATACATATCTAACAACCAgtaagtgaccaactttatggtttttggattttcgacaaggtaagatatgttttaccaagggaaatgagtatcaaccaaacataacatttgatgtttgacttcgcag------
  |||||||||||||| || || || || || || || ||||| || || |||||||||||||| ||||||||||| |||||||| || |||  |||||||||||  ||  |  | ||||||||  |    || |||  ||   |||  ||  | |     |||||  | |     | | |||| |||| |  |||   |    ||      
ACTGGAAATTTGGAGAGGAGGGGAATAAGTACTTTCGGCATGCAACCGGGCAGATTTATGCCATCTCAAAGGATCTGGCCACATATATCTCTGTCAACCAgtaag-aacaga--taatggttttcag----tctacagagtctcatagattccatcttccaaaatgttttt-----atatataatattttaaatttttttctctagtcactg