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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAGATGGGTTTGACAGATGATTTCGAAACTTCATTGCAAGTTCTTCGTGGATTTGAGACTGATATTACCGTTGAGGTTAATGAAATCAAGgtagtgactaaactgaagaaatgctttgatgtgatttcttgtcttatttaaaattttcattttatgcactctgcag

Basic information

species Arabidopsis thaliana
transcript AT1G19450.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G19450.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA14G08070.1 (Glycine max), 5'ss of exon 9
GCAAAGATGGGTTTGACAGATGATTTCGAAACTTCATTGCAAGTTCTTCGTGGATTTGAGACTGATATTACCGTTGAGGTTAATGAAATCAAGgtagtgactaaactgaagaaatgctttgatgtg-atttcttgtcttatttaaaatttt-----cattttatgcactctgcag--------------------------------
||||| |||||  ||||||| || || |||||||| |||||||| || || || ||||||||||||||| | ||||| || |||||||| |||||| | |  |   | | |   || |   |||       ||  | ||   || | ||||     ||||  ||| |  ||  |                                 
GCAAAAATGGGAATGACAGAAGAATTTGAAACTTCCTTGCAAGTGCTCCGAGGCTTTGAGACTGATATTTCTGTTGAAGTGAATGAAATTAAGgtaataagcatcatca-gttttgttccaatgcatgaccctcatatttcctatatttttattaccattaaatgtatcctaaaattgactttttatgtgggagtcattttattcag

upper sequence: AT1G19450.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv18s0001g12560.t01 (Vitis vinifera), 5'ss of exon 9
GCAAAGATGGGTTTGACAGATGATTTCGAAACTTCATTGCAAGTTCTTCGTGGATTTGAGACTGATATTACCGTTGAGGTTAATGAAATCAAGgtagtgacta--aactgaagaaatgctttgatgtgatttcttgtcttatttaaaattttcattttatgc-actctgcag----------------------------------------------------------------------------------------
|||||||||||| ||||||| ||||| ||| |||| |||||||||||||| || ||||| |||||||||||  |||| || ||||||||||||||| | |  |   |   ||| | | ||||  ||| |||     |  |  || |  | ||||   ||  | | | |                                                                                            
GCAAAGATGGGTATGACAGAAGATTTTGAAGCTTCTTTGCAAGTTCTTCGGGGGTTTGATACTGATATTACTTTTGAAGTGAATGAAATCAAGgtaataatcattgatctaagtactccttttttgtaattaagctttatggttcatttcttcaacataaactattttatgctagaaaaatgattagtgatggttttgcatttcatctctttctaaaactatgggctcacaataattttgtttgtatttgcattgttaag