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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATGGCACAGGAAAATGGGCCGGGAATATTACAGAACCTTACAAGTTAACACGGCAATGTGAAGTTACCGCCATTCTCATCTTATTCGGGCTCCCTAGgtaaaaaagactctttttgcttccattgaattgatcttatgtcacagttcaagcattgatggttttgctgaattttgttcag

Basic information

species Arabidopsis thaliana
transcript AT1G19270.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116457268|gb|EG499860.1|EG499860
EST:     ACACGGCAATGTGAAGTTACCGCCATTCTCATCTTATTCAGGCTCCCTAG                         GTTACTTACTGGTTCGATTCTAGCTCATGAGATGATGCATGCGTGGATGAG
genomic: ACACGGCAATGTGAAGTTACCGCCATTCTCATCTTATTCGGGCTCCCTAGgtaaaaaaga ... ttttgttcagGTTACTTACTGGTTCGATTCTAGCTCATGAGATGATGCATGCGTGGATGAG
EST: gi|116457269|gb|EG499861.1|EG499861
EST:     ACACGGCAATGTGAAGTTACCGCCATTCTCATCTTATTCGGGCTCCCTAG                         GTTACTTACTGGTTCGATTCTAGCTCATGAGATGATGCATGCGTGGATGAG
genomic: ACACGGCAATGTGAAGTTACCGCCATTCTCATCTTATTCGGGCTCCCTAGgtaaaaaaga ... ttttgttcagGTTACTTACTGGTTCGATTCTAGCTCATGAGATGATGCATGCGTGGATGAG
EST: gi|116435622|gb|EG478214.1|EG478214
EST:     ACACGGCAATGTGAAGTTACCGCCATTCTCATCTTATTCGGGCTCCCTAG                         GTTACTTACTGGTTCGATTCTAGCTCATGAGATGATGCATGCGTGGATGAG
genomic: ACACGGCAATGTGAAGTTACCGCCATTCTCATCTTATTCGGGCTCCCTAGgtaaaaaaga ... ttttgttcagGTTACTTACTGGTTCGATTCTAGCTCATGAGATGATGCATGCGTGGATGAG