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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATCGTCCTCTTACTCCGCGGGGAAGCTGGTCCGGGATTGTATTTTAGATTTTCATCAAGTGCCCATGATTGCTTGGGATTCTTGCACCATGGTTCCAGgtgacaaacacgtctgtctattttcccaaaagttttaatttacaaaatgtagtactaacaaaaaatcaatcaatcaattcacttgttcag

Basic information

species Arabidopsis thaliana
transcript AT1G18470.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G18470.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA17G13040.1 (Glycine max), 5'ss of exon 9
AGATCGTCCTCTTACTCCGCGGGGAAGCTGGTCCGGGATTGTATTTTAGATTTTCATCAAGTGCCCATGATTGCTTGGGATTCTTGCACCATGGTTCCAGgtgacaaacacgtctgt----ctattttccc-----aaaagttttaatttacaaaatgtagtactaacaaaaa--atcaatcaatcaattcacttgttcag
|  | || ||  | || ||  | | |||||||   ||| | |||||||||||||| ||||| || |||||||||||||| |||||||| |||||||| |||| |  ||      | |    ||||| |        |||| |||  ||||| |    || ||     |  |    ||   ||| ||  ||| | ||  |  
AACTTGTGCTTCTGCTACGAAGTGGAGCTGGTGGAGGAATATATTTTAGATTTTCTTCAAGAGCTCATGATTGCTTGGGGTTCTTGCATCATGGTTCTAGgtaatgaattttcttttattgctattattgttagggaaaactttagatttaaactgagtggtttggtctgatttcatttgtcattctgttcccctgagct-

upper sequence: AT1G18470.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA05G07960.1 (Glycine max), 5'ss of exon 9
AGATCGTCCTCTTACTCCGCGGGGAAGCTGGTCCGGGATTGTATTTTAGATTTTCATCAAGTGCCCATGATTGCTTGGGATTCTTGCACCATGGTTCCAGgtgacaaaca--cgtctgt--ctattttccc----aaaagttttaatttacaaaatgtagtactaacaaaaaatcaatcaatcaattcacttgttcag---
|| | || ||  | || ||  | | |||||||   ||| | |||||||||||||| ||||| || |||||||||||||| ||||||  ||||||||| |||| |  ||    | | |||  ||||| |        |||  ||||  ||  ||| | |  |  |       | |  ||   ||| |    ||   | |   
AGCTTGTGCTTCTGCTACGAAGTGGAGCTGGTGGAGGAATATATTTTAGATTTTCTTCAAGAGCTCATGATTGCTTGGGGTTCTTGTGCCATGGTTCTAGgtaatgaattttcttttgttgctattattattagggaaaactttagatt-taaactctgttgtttggtctgatttcatttgtcattctgtttcccccgatc

upper sequence: AT1G18470.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv17s0000g04160.t01 (Vitis vinifera), 5'ss of exon 9
AGATCGTCCTCTTACTCCGCGGGGAAGCTGGTCCGGGATTGTATTTTAGATTTTCATCAAGTGCCCATGATTGCTTGGGATTCTTGCACCATGGTTCCAGgtgacaaacacgtctgtctattttcccaaaagttttaatttacaaaatgtagtactaacaaaaaatcaatcaatcaattcacttgttcag--------------------------------------------
| || || || ||||| |     | ||||||  | |||   ||||||| || ||| || || || ||||||||||| || ||| |||||||||||||||||| |  |   |  ||  | |        ||| ||        ||| |||    |||   ||| |||  | | ||  | |   |||| ||                                             
AAATTGTTCTTTTACTACATAATGGAGCTGGGACAGGAAGATATTTTACATATTCTTCTAGAGCTCATGATTGCTTTGGGTTCCTGCACCATGGTTCCAGgtaatgacttctacttcccaccagtaggaaatttcaggcaggcaagatggttaact--taaacaatgtaaccattgaatgtgttgtgcaactgtgaagtaattcttgctgcattttgacaatttctcaattcag