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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGACGTTCTTTCAAATGGAAACTCTGTTCAAGAAGTTGCTCATATCACAAACGGATCAAATCCTGGAAACTGCATATCTGTTCTTCGTgtaagcttgctcatttgaaactatacagatttttggattcttgattcttcaaactgataatttggttcctttgttttcatcag

Basic information

species Arabidopsis thaliana
transcript AT1G17920.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G17920.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA16G34350.1 (Glycine max), 5'ss of exon 9
TGGGACGTTCTTTCAAATGGAAACTCTGTTCAAGAAGTTGCTCATATCACAAACGGATCAAATCCTGGAAACTGCATATCTGTTCTTCGTgtaagct-tgctcatttgaaa----ctatacagatttt---------tggattcttgattcttcaaac--tgataatttggttcctttgttttca-tcag
||||| |||||||| ||||| ||  |||| ||||| |||||||||||  |||| || ||| | ||||| |||||||||||||| ||||| || ||   ||||   |   ||    |||  || |||||         |   || |  |||| | |||   | | | |||  ||  |||  |  || | | 
TGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGAgtgagtcatgctttctctcaatgttctaatcaaattttggttttacatatgttgtcaattcctaaaaacataacatttttttttttttagtcccaattaa

upper sequence: AT1G17920.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA09G29810.1 (Glycine max), 5'ss of exon 9
TGGGACGTTCTTTCAAATGGAAACTCTGTTCAAGAAGTTGCTCATATCACAAACGGATCAAATCCTGGAAACTGCATATCTGTTCTTCGTgtaagct---tgctcatttgaaactata--cagatttttggattcttgattcttcaaa--ctgataatttgg----ttcctttgttttcatcag------
||||| |||||||| ||||| ||  |||| ||||| |||||||||||  |||| ||  || | ||||| |||||||||||||| ||||| |||||     |  ||  |  |  || ||  || |||   |  | | |      ||||   || | ||  ||     ||  ||  ||||||  |       
TGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTCCACACCCTGGTAACTGCATATCTGTGCTTCGAgtaagtcatgttttctctcaatgctctaatcaaattccggtttgcatatgctgtcaattcctaaaaacatgacattttttttaattttcaaaaaaaacat