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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGATACGTTGCAACTGGGCGACAAAGGGAGCCACTTCTGGTGAGGACAAACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGGgtatgtttaactattacctatcatgaaatagaaaatcaaatggaaatagagaaaagcctcaaataaacttaattcttaaccctttgatgtttatacattggcttatttgttcctgcag

Basic information

species Arabidopsis thaliana
transcript AT1G17370.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116477129|gb|EG519721.1|EG519721
EST:     ACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGG                         AGGATGGTAAAGATAC
genomic: ACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGGgtatgtttaa ... gttcctgcagAGGATGGTAAAGATAC
EST: gi|116486725|gb|EG529317.1|EG529317
EST:     ACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGG                         AGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGT
genomic: ACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGGgtatgtttaa ... gttcctgcagAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGT
EST: gi|124971942|gb|EL045669.1|EL045669
EST:     TGGTGTCTCGG                         AGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGT
genomic: TGGTGTCTCGGgtatgtttaa ... gttcctgcagAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGT
EST: gi|164166038|gb|ES042443.1|ES042443
EST:     GATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGG                         AGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGT
genomic: GATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGGgtatgtttaa ... gttcctgcagAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGT
EST: gi|116486728|gb|EG529320.1|EG529320
EST:     ACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGCCTCGG                         AGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGT
genomic: ACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGGgtatgtttaa ... gttcctgcagAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGT
EST: gi|125116760|gb|EL166172.1|EL166172
EST:     CAGAGCTCTGATTCCAAAAGCGTCGTTGGAACTTACCAGTGGTGTCTCGG                         AGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATG
genomic: CAGAGCTCTGATTCCAAAAGCGTCG-TGGAACTTACCAGTGGTGTCTCGGgtatgtttaa ... gttcctgcagAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATG
EST: gi|116386137|gb|EG428729.1|EG428729
EST:     ACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGG                         AGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGT
genomic: ACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGGgtatgtttaa ... gttcctgcagAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGT
EST: gi|116486731|gb|EG529323.1|EG529323
EST:     ACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGG                         AGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGC
genomic: ACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGGgtatgtttaa ... gttcctgcagAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGT
EST: gi|116386087|gb|EG428679.1|EG428679
EST:     ACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGG                         AGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGT
genomic: ACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGGgtatgtttaa ... gttcctgcagAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGT
EST: gi|124981113|gb|EL054002.1|EL054002
EST:     ACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGG                         AGGATGGTAAAG
genomic: ACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGGgtatgtttaa ... gttcctgcagAGGATGGTAAAG
EST: gi|164120337|gb|ES191873.1|ES191873
EST:     AAAGCGTCGTGGAACTTACCAGTGGTGTCTCGG                         AGGATGGTAAAGATACTACTAATGGCGAAGCTCCTGAGAACAATGCTCAGT
genomic: AAAGCGTCGTGGAACTTACCAGTGGTGTCTCGGgtatgtttaa ... gttcctgcagAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGATACGTTGCAACTGGGCGACAAAGGGAGCCACTTCTGGTGAGGACAAACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGGgtatgtttaactattacctatcatgaaatagaaaatcaaatggaaatagagaaaagcctcaaataaacttaattcttaaccctttgatgtttatacattggcttatttgttcctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT