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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTTATTTCGGTCCAAAAAGTGTGCATATTGACAATTTTATAGAGGCAAAGATAAGTTTCCATTCACGTGCATACAAAGGCAATGTTTGGTGCTATAGgtagaaattggtagctgatataaaggtttctgtcaaaacttatttaatttgatttgcatgtggacgggtgtttcag

Basic information

species Arabidopsis thaliana
transcript AT1G15200.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15200.4 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv12s0055g00360.t01 (Vitis vinifera), 5'ss of exon 9
----TTTTTTATTTCGGTCCAAAAAGTGTGCATATTGACAATTTTATAGAGGCAAAGATAAGTTTCCATTCACGTGCATACAAAGGCAATGTTTGGTGCTATAGgtagaaattggtagctgatataaaggtttctgtcaaaacttatttaatttgatttgcatgtggacgggtgtttcag
    ||||| |||| ||||||||| |||| |||||| |||||||||| ||| | ||||||||||||  |||| |||||||     | |     ||   | ||     |   ||  | || |                                                           
GTTATTTTTAATTTTGgtccaaaa-gtgtccatattcacaattttattgagacgaagataagtttctgttcatgtgcatagtgttgaagcaactgtgaccatttcctgc--ttctttgcag-----------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86055198|gb|DR350955.1|DR350955
EST:     AAGATAAGTTTCCATTCACGTGCATACAAAGGCAATGTTTGGTGCTATAG                         GACTAAAGCAGAGCCACGGATATACTATGCACCAGTGAAGCCTTTGGAAGA
genomic: AAGATAAGTTTCCATTCACGTGCATACAAAGGCAATGTTTGGTGCTATAGgtagaaattg ... ggtgtttcagGACTAAAGCAGAGCCACGGATATACTATGCACCAGTGAAGCCTTTGGAAGA