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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGCTAACTGCTATgtatttcatttgcaggttattttttatttcggtccaaaaagtgtgcatattgacaattttatagaggcaaagataagtttccattcacgtgcatacaaaggcaatgtttggtgctataggtagaaattggtagctgatataaaggtttctgtcaaaacttatttaatttgatttgcatgtggacgggtgtttcag

Basic information

species Arabidopsis thaliana
transcript AT1G15200.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15200.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv12s0055g00360.t01 (Vitis vinifera), 5'ss of exon 9
ATTGCTAACTGCTATgtatttcatttgcaggttattttttatttcggtccaaaaagtgtgcatattgacaattttatagaggcaaagataagtttccattcacgtgcatacaaaggcaatgtttggtgctataggtagaaattggtagctgatataaaggtttctgtcaaaacttatttaatttgatttgcatgtggacgggtgtttcag
                              ||||||||| |||| ||||||||| |||| |||||| |||||||||| ||| | ||||||||||||  |||| |||||||     | |     ||   | ||   |     ||  | || |                                                           
------------------------------GTTATTTTTAATTTTGgtccaaaa-gtgtccatattcacaattttattgagacgaagataagtttctgttcatgtgcatagtgttgaagcaactgtgaccat--ttcctgcttctttgcag-----------------------------------------------------------