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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAACCATGCTATTGGAGCAGCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAGgttagtgtgcttaatattggactagctaataaaatctgtgacaagtcatatgctgtgcaaattattttggcttaccattcatcccccttgcgccttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G11910.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G11910.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA07G39240.1 (Glycine max), 5'ss of exon 9
GATAAACCATGCTATTGGAGCAGCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAGgttagtgt-gcttaatattggactagctaataaaatctg--tgacaagtcatatgc---------tgtgcaaattattttggcttacc--attcatcccccttgcgccttgcag
|||||||||||| ||||||||| |||||||| | |||||  | |||||||||||||| |   | || || || || || |||||||| ||||||||||| || |||     ||   ||| |     |    | | | ||  | |  ||     |||         || |    |   ||||    | |  |||  | | | |  | ||||  ||
GATAAACCATGCAATTGGAGCATCTGGAGTTATGAGCCAAGAATGCAAGACTGTTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGTCTGAAgtgagtaccatttgtaatttgttctccccgcatattttggtttattagattcttgcctatgatcatgagtgggtatgtttgaaagatctgattttttcacttgacaccttttag

upper sequence: AT1G11910.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA07G39240.2 (Glycine max), 5'ss of exon 9
GATAAACCATGCTATTGGAGCAGCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAGgttagtgt-gcttaatattggactagctaataaaatctg---tgacaagtcat--------atgctgtgcaaattattttggcttacc--attcatcccccttgcgccttgcag------
|||||||||||| ||||||||| |||||||| | |||||  | |||||||||||||| |   | || || || || || |||||||| ||||||||||| || |||     ||   ||| |     |    | | | ||   |   |  |  |        ||  || |    |   ||||    | |  |||  | | | |  | ||||  ||      
GATAAACCATGCAATTGGAGCATCTGGAGTTATGAGCCAAGAATGCAAGACTGTTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGTCTGAAgtgagtaccatttgtaatttgttctccccgcatattttggtttattagattcttgcctatgatcatgagtgggtatgtttgaaagatctgattttttcacttgacaccttttagacacag

upper sequence: AT1G11910.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 9
GATAAACCATGCTATTGGAGCAGCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAGgttagtgtg--cttaatattggact--agctaataaaatctgtgacaagtcatat-gctgtgca-aattattttggcttaccattcatcccccttgcgcc-ttgcag-----------------------------------------------------------------------------------------
|||||| ||||| ||||||||  | ||||||||||||||| | ||||||||||| || |  || || ||| | || ||  ||||||||||||| || ||||| |       |||  ||||    |  | ||| |  ||| | | |     || ||  ||   ||    |  |    | |      |||  |  || |     ||  |                                                                                         
GATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGCCAGGAATGCAAGACTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacactatctttttattatcttttatctagtttaatttctcaatctccagattacttcacatggctgctcaaacatgttccacattacgttttcataactggggaggtgttactggcgttaattgtttccagaatatgtctaatgtacttctataattaactgactacatcttttggattttgtattttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47832120|gb|CK121804.1|CK121804
EST:     CTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAG                         ACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATGGT
genomic: CTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAGgttagtgtgc ... cgccttgcagACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATGGT
EST: gi|164137006|gb|ES201123.1|ES201123
EST:     TTGGATTTACTTTTGTCTGAG                         A
genomic: TTGGATTTACTTTTGTCTGAGgttagtgtgc ... cgccttgcag-
EST: gi|164137006|gb|ES201123.1|ES201123
EST:     TTGGATTTACTTTTGTCTGAG                         A
genomic: TTGGATTTACTTTTGTCTGAGgttagtgtgc ... cgccttgcag-
EST: gi|116484531|gb|EG527123.1|EG527123
EST:     CTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAG                         ACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATGGT
genomic: CTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAGgttagtgtgc ... cgccttgcagACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATGGT
EST: gi|116417009|gb|EG459601.1|EG459601
EST:     CTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAG                         ACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATGGT
genomic: CTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAGgttagtgtgc ... cgccttgcagACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATGGT
EST: gi|125036052|gb|EL108321.1|EL108321
EST:     CTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAG                         ACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATGGT
genomic: CTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAGgttagtgtgc ... cgccttgcagACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATGGT
EST: gi|164119526|gb|ES098196.1|ES098196
EST:     TGGATTTACTTTTGTCTGAG                         ACCCAACCGAAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATGG
genomic: TGGATTTACTTTTGTCTGAGgttagtgtgc ... cgccttgcagACCCAACCG-AAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATGG
EST: gi|164192939|gb|EL986989.1|EL986989
EST:     CAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAG                         ACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATGGT
genomic: CAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAGgttagtgtgc ... cgccttgcagACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATGGT
EST: gi|125081753|gb|EL142856.1|EL142856
EST:     CTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAG                         ACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATGGT
genomic: CTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAGgttagtgtgc ... cgccttgcagACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATGGT
EST: gi|125311317|gb|EL325402.1|EL325402
EST:     CTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAG                         ACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGT
genomic: CTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAGgttagtgtgc ... cgccttgcagACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGT