1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaaccacaacgttctaatgatcgaggctgcaacatgaacgattccaatttagaagttgagattttgatatatgtatattctcttgcag
species | Arabidopsis thaliana |
transcript | AT1G09340.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CGAAAGGGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGEST: gi|124823819|gb|EH908685.1|EH908685
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATG
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGEST: gi|124867630|gb|EH952067.1|EH952067
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGG
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGEST: gi|86080119|gb|DR375876.1|DR375876
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAG
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCGEST: gi|116482238|gb|EG524830.1|EG524830
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCG
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCGEST: gi|125217142|gb|EL231225.1|EL231225
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCG
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGEST: gi|125015825|gb|EL088094.1|EL088094
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAG
EST: TCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACEST: gi|124917730|gb|EH991604.1|EH991604
genomic: TCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAAC
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCGEST: gi|124893349|gb|EH972251.1|EH972251
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCG
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCGG CATTTCTTTGCATCGGEST: gi|125023670|gb|EL095939.1|EL095939
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGG
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGEST: gi|125168639|gb|EL193184.1|EL193184
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAG
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCAEST: gi|124810993|gb|EH895859.1|EH895859
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCA
EST: CCTTTCCGTGATCAG CATTTCTTTGCTATCGGTTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACEST: gi|125270778|gb|EL284863.1|EL284863
genomic: CCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGC-ATCGG-TGGAGAAAGCAAAGCATGTCCTCGGATGGAAAC
EST: AAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCGEST: gi|124739083|gb|EH830245.1|EH830245
genomic: AAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCG
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCGEST: gi|125187798|gb|EL202752.1|EL202752
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCG
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGEST: gi|125281534|gb|EL295619.1|EL295619
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTG
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAEST: gi|124834767|gb|EH919206.1|EH919206
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGA
EST: GTAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCGEST: gi|125041651|gb|EL113920.1|EL113920
genomic: G-AAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCG
EST: CGAAAGGGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAAGAAAGCAAAGCATGTCCTCGGATGEST: gi|124931609|gb|EL008951.1|EL008951
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGA-GAAAGCAAAGCATGTCCTCGGATG
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCGEST: gi|124917994|gb|EH991868.1|EH991868
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCG
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCGEST: gi|124908856|gb|EH982936.1|EH982936
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCG
EST: CCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCGEST: gi|124741880|gb|EH833042.1|EH833042
genomic: CCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCG
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTEST: gi|124828034|gb|EH912900.1|EH912900
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCT
EST: GAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCGEST: gi|86083439|gb|DR379198.1|DR379198
genomic: GAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCG
EST: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAG CATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCG
genomic: CGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaacca ... tctcttgcagCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGgtaaaaaccacaacgttctaatgatcgaggctgcaacatgaacgattccaatttagaagttgagattttgatatatgtatattctcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG