1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGATGAGACTACGGGATGGAAAGCTAAGTGAATGGGAGATGAGAAGGTATGGTACAGTTGCTGCACAGCTTCTCCGTGACGTTAAGATAGATGTTCAGgtgcgtatatacataccattgtggttacgtaatctctcataaatgcaagtaaaataatctcttgtgtaaattttctttgaatttgcttgtag
species | Arabidopsis thaliana |
transcript | AT1G08125.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATGGTACAGTTGCTGCACAGCTTCTCCGTGACGTTAAGATAGATGTTCAG GTGAAAAAATAATGTTGCATTAGCTACTTTCAGAGCCTTGTTCCTCAAGATEST: gi|116414102|gb|EG456694.1|EG456694
genomic: ATGGTACAGTTGCTGCACAGCTTCTCCGTGACGTTAAGATAGATGTTCAGgtgcgtatat ... ttgcttgtagGTGAAAAAATAATGTTGCATTAGCTACTTTCAGAGCCTTGTTCCTCAAGAT
EST: ATGGTACAGTTGCTGCACAGCTTCTCCGTGACGTTAAGATAGATGTTCAG GTGAAAAAATAATGTTGCATTAGCTACTTTCAGAGCCTTGTTCCTCAAGATEST: gi|19799739|gb|AU231029.1|AU231029
genomic: ATGGTACAGTTGCTGCACAGCTTCTCCGTGACGTTAAGATAGATGTTCAGgtgcgtatat ... ttgcttgtagGTGAAAAAATAATGTTGCATTAGCTACTTTCAGAGCCTTGTTCCTCAAGAT
EST: ATGGTACAGTTGCTGCACAGCTTCTCCGTGACGTTAAGATAGATGTTCAG GTGAAAAAATAATGTTGCATTAGCTACTTTCAGACCCTTGTTCCTCAAGAT
genomic: ATGGTACAGTTGCTGCACAGCTTCTCCGTGACGTTAAGATAGATGTTCAGgtgcgtatat ... ttgcttgtagGTGAAAAAATAATGTTGCATTAGCTACTTTCAGAGCCTTGTTCCTCAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGATGAGACTACGGGATGGAAAGCTAAGTGAATGGGAGATGAGAAGGTATGGTACAGTTGCTGCACAGCTTCTCCGTGACGTTAAGATAGATGTTCAGgtgcgtatatacataccattgtggttacgtaatctctcataaatgcaagtaaaataatctcttgtgtaaattttctttgaatttgcttgtag
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