Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGCAAGGTGTGAAAACAGAAAATCTAGTTGGTCAGTTGAAAGGTGAATTTGATGTGCAGACTACATTTGAGGGTGACAATAATGTATTGATGCAGCAGgtaagcggcacattattgtgatttgcatgatcaatactgtaaatttccctgttttgaccatacaattttactttaccgttggggaatttag

Basic information

species Arabidopsis thaliana
transcript AT1G06290.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G06290.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os06g24704.1 (Oryza sativa), 5'ss of exon 9
AGGGCAAGGTGTGAAAACAGAAAATCTAGTTGGTCAGTTGAAAGGTGAATTTGATGTGCAGACTACATTTGAGGGTGACAATAATGTATTGATGCAGCAGgtaagcg-gcacattatt-gtgatttgcatgatcaatactgtaaatttccctgttttgaccatacaattttactttaccgttggggaatttag
 || |||||| |||| ||||| ||||   | ||    || |||| |||||||||||| ||| ||||||||||||| |||||||||||  | ||||||||||| |    ||  ||| || || || |   |  |     |       ||   || || ||  |        || || ||| ||   |       
TGGCCAAGGTTTGAAGACAGAGAATCGCATAGGAATTTTCAAAGCTGAATTTGATGTCCAGTCTACATTTGAGGGCGACAATAATGTTCTAATGCAGCAGgttattttgcttattgtttgtcatctttgtatttctcccaaaggtattttatgcttagattaattttaactatttaaccttttcag-------

upper sequence: AT1G06290.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G014136_T01 (Zea mays), 5'ss of exon 9
AGGGCAAGGTGTGAAAACAGAAAATCTAGTTGGTCAGTTGAAAGGTGAATTTGATGTGCAGACTACATTTGAGGGTGACAATAATGTATTGATGCAGCAGgtaagcggcacatt--attgtg-atttgcatgatcaatactgtaaatttccctgttttgaccatacaattttactttaccgttggggaatttag
||| |||||| | || || || || |   | ||    || |||  |||||||||||| ||| | |||||||||||||| || |||||  | ||||||||||| |  |     ||   |  || ||     | |||||   ||     |     ||| | || ||  ||  ||  ||                  
AGGTCAAGGTCTAAAGACTGAGAACCGCATAGGAATTTTCAAATCTGAATTTGATGTCCAGTCCACATTTGAGGGTGATAACAATGTGCTAATGCAGCAGgttattgttgttttcagtcatgcatccattttatcaaaggtgcttcgtgtgtggttgtaacaatttaaccttgtttag----------------

upper sequence: AT1G06290.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA06G43840.1 (Glycine max), 5'ss of exon 9
AGGGCAAGGTGTGAAAACAGAAAATCTAGTTGGTCAGTTGAAAGGTGAATTTGATGTGCAGACTACATTTGAGGGTGACAATAATGTATTGATGCAGCAGgtaagcggcacattat--------tgtgatttgcatgatcaata--ctgtaaatttccctgttttgaccatacaattttactttaccg-ttggggaatttag
||| ||||| || ||| | |||||||  |||||  | || |  |||||||||||||||||  | ||||||||||| ||||| |||||  |||||||||||||||   | | ||| |        ||  ||||| || || | ||  |   | ||||     ||   ||| |  |    |  |   | | |||  ||   |  
AGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTGATGCAGCAGgtaaaatgaatattctgttaaatatgaaatttgaataataattaagcacaacatttttaaattcaaaccttggagacatgatgagctgattgcagagcat--

upper sequence: AT1G06290.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 9
AGGGCAAGGTGTGAAAACAGAAAATCTAGTTGGTCAGTTGAAAGGTGAATTTGATGTGCAGACTACATTTGAGGGTGACAATAATGTATTGATGCAGCAGgtaagcggcacattat--------tgtgatttgcatgatcaata--ctgtaaatttccctgttttgaccatacaattttactttaccg-ttggggaatttag
||| ||||| || ||| | |||||||  |||||  | || |  |||||||||||||||||  | ||||||||||| ||||| |||||  | |||||||||||||   |   ||| |        ||  ||||| || || | ||  |   | ||||     ||   |||    |    |  |   | | |||   |   |  
AGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTAATGCAGCAGgtaaaatgagtattctgttatatatgaaatttgaataataattaagcacaacatttttaaattcaaacctaggagacatgatgagctgattgcaaagcat--

upper sequence: AT1G06290.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv12s0028g02660.t01 (Vitis vinifera), 5'ss of exon 9
AGGGCAAGGTGTGAAAACAGAAAATCTAGTTGGTCAGTTGAAAGGTGAATTTGATGTGCAGACTACATTTGAGGGTGACAATAATGTATTGATGCAGCAGgtaag--cggcacattattgtgatttgcatgatcaatactgta----aatttccctgttttgaccataca-attttactttaccgt---tggggaatttag
 ||||||||  |||| || |||||||   |||| ||  |||||||||||| |||||||||  | ||||||||||||||||| || ||  ||||||| |||||||   |   | || | | |  ||   |||| |  |  ||||     |   |      ||||  | ||| || |  |  |  |     |||  |  | | 
GGGGCAAGGCTTGAAGACTGAAAATCGGATTGGGCAAATGAAAGGTGAATATGATGTGCAATCCACATTTGAGGGTGACAACAACGTTCTGATGCAACAGgtaatgtctatatatcagtttctttatgatgaactctcatgtacaaggacggcaacacgttgatgacacagatatggcaatgtctaacatggtcacctca-