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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAGAATACTGGATTCGTTATGTGACAAACATGGAAGCAAGTGGAAGTGCGGACCTTGCAGAAAATGCCCTTGCTCGAGCAACTCAAGTCTTTGTCAAGgtatgaattgtgtttctccaacctttctgggtagttaaatttcattattttcgagtggctttgcagaataattctaaatagtcagctttgagtctcatggttatttatctgctttcttttctttcatag

Basic information

species Arabidopsis thaliana
transcript AT1G04080.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04080.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv07s0005g04290.t01 (Vitis vinifera), 5'ss of exon 3
CCCAGAATACTGGATTCGTTATGTGACAAACATGGAAGCAAGTGGAAGTGCGGACCTTGCAGAAAATGCCCTTGCTCGAGCAACTCAAGTCTTTGTCAAGgtatg-aattgtgtttctccaac-ctttctgggtagttaaatttcattattttcgagtggctttgcagaataattctaaatagtcagctttgagtctcatggttatttatctgctttcttttctttcatag
 || || |||||||| || |||||   |  |||||| || ||||||||   ||| |||||| | |||||||||||||| || |||||||| |||||||||||||| |||| | ||| | | |  |  ||| | || |||||  |    ||   ||       |       |  ||||||      |   |||||| | |   |||||| ||| |                 
TCCCGAGTACTGGATACGATATGTTTTATGCATGGAGGCCAGTGGAAGCATGGATCTTGCAAACAATGCCCTTGCTCGTGCTACTCAAGTTTTTGTCAAGgtatggaattctatttttactatgcaatcttgatacttaaaactggaaatcaccg------ctcatgatctggttctaa-----taatgttgagtttaa--attattt-tcttc-----------------