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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTCATGGTGCTTACGGTGAAATGCTTGATAAGAGATGGCGTAGTGAACTTAAAAGCCTCCTAGATCGTGGCTGGGTACTCGCATATGCAGACGTTAGgtcagtatcatctttctcttctcgttcagaacattcaacagcaagaagctaagacttccttcatgtatccattgttctcggtttttag

Basic information

species Arabidopsis thaliana
transcript AT5G66960.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66960.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G065665_T01 (Zea mays), 5'ss of exon 7
ATGTTCATGGTGCTTACGGTGAAATGCTTGATAAGAGATGGCGTAGTGAACTTAAAAGCCTCCTAGATCGTGGCTGGGTACTCGCATATGCAGACGTTAGgtcagtatcatctttctcttctcgttcagaacattcaacagcaagaagctaagacttccttcatgtatccattgttctcggtttttag-------------
|||  |||||||||||||||||||| || |||||  | ||||| |||||| | ||||  || || |||||||| |||||  | |||||||| || |||||||  || |   || | ||   |   |       | | |    | |||  |   |        || || |   |||  || |  |  |              
ATGGACATGGTGCTTACGGTGAAATTCTGGATAAACGTTGGCGCAGTGAATTAAAAACTCTACTGGATCGTGGTTGGGTGATTGCATATGCTGATGTTAGgtatgtctaccctatttcaattacctttattattgctatgaaatgaacttggtaagcttcatat-taacttctgtcatccgcctggataatttcgaggcat