1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGAATCCTTAGCGTTAAATACTCAATCCCTGATGACATACGGATATCACCTGAATGCTGTCATCTTATTTCAAGAATCTTCGTGGCTGATCCCGCTACCgtaagtcattccctttcctcatctctaatctttaaaccatcggcgagatgactgatgtttgatgttgtttgttacag
species | Arabidopsis thaliana |
transcript | AT5G66880.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AATGCTGTCATCTTATTTCAAGAATCTTCGTGGCTGATCCCGCTACC AGAATAAGCATACCAGAGATACAAAACCCATAGTTGGTTCTTGAAGAEST: gi|86079494|gb|DR375251.1|DR375251
genomic: AATGCTGTCATCTTATTTCAAGAATCTTCGTGGCTGATCCCGCTACCgtaagtcatt ... tttgttacagAGAATAAGCATACCAGAGAT-CAAAACCCATAGTTGGTTCTTGAAGA
EST: CTGAATGCTGTCATCTTATTTCAAGAATCTTCGTGGCTGATCCCGCTACC AGAATAAGCATACCAGAGATCAAAACCCATAGTTGGTTCTTGAAGAATCTC
genomic: CTGAATGCTGTCATCTTATTTCAAGAATCTTCGTGGCTGATCCCGCTACCgtaagtcatt ... tttgttacagAGAATAAGCATACCAGAGATCAAAACCCATAGTTGGTTCTTGAAGAATCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATCCTTAGCGTTAAATACTCAATCCCTGATGACATACGGATATCACCTGAATGCTGTCATCTTATTTCAAGAATCTTCGTGGCTGATCCCGCTACCgtaagtcattccctttcctcatctctaatctttaaaccatcggcgagatgactgatgtttgatgttgtttgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT