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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAACTTAAACGTTTTGCCAGTTGGTTATGGGTTCTCAGCTGTTATGAAAGATTTGAAATTGCTTTTGGTAGATAAGGTTTATGTTACAAACATTCTTGgtaaccattttcccttgtcatgtattaaaaagcatctgtgttcttgtatgatttattgattacctgcaactgttttccttcttttctcag

Basic information

species Arabidopsis thaliana
transcript AT5G64500.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116476814|gb|EG519406.1|EG519406
EST:     AGATTTGAAATTGCTTTTGGTAGATAAGGTTTATGTTACAAACATTCTTG                         GGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATATTGGGGACCAA
genomic: AGATTTGAAATTGCTTTTGGTAGATAAGGTTTATGTTACAAACATTCTTGgtaaccattt ... cttttctcagGGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATATTGGGGACCAA
EST: gi|164045255|gb|EL996707.1|EL996707
EST:     TAAGGTTTATGTTACAAACATTCTTG                         GGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATATTGGGGACCAA
genomic: TAAGGTTTATGTTACAAACATTCTTGgtaaccattt ... cttttctcagGGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATATTGGGGACCAA
EST: gi|116476815|gb|EG519407.1|EG519407
EST:     AGATTTGAAATTGCTTTTGGTAGATAAGGTTTATGTTACAAACATTCTTG                         GGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATATTGGGGACCAA
genomic: AGATTTGAAATTGCTTTTGGTAGATAAGGTTTATGTTACAAACATTCTTGgtaaccattt ... cttttctcagGGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATATTGGGGACCAA