Sequence
atgc intronic sequence ATGC exonic sequenceGCGGTTGAGGAAGCACAACGAGCTATTAATGCTGCACATGTAGAGGTCGAGAGCGTGGAAAATGGAGTTGGTATCGTTAAACTCATGGGCAGATACAGTGgtaaatattctgtgacatatgttgattactttcttttgtgaatacgaagttaacttgtggtacaaattctgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G61580.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G61580.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G33820.1 (Glycine max), 5'ss of exon 9
GCGGTTGAGGAAGCACAACGAGCTATTAATGCTGCACATGTAGAGGTCGAGAGCGTGGAAAATGGAGTTGGTATCGTTAAACTCATGGGCAGATACAGTGgtaaatattctgtgacatatgttgattactttcttttgtgaata-cgaagttaacttgtggtacaaattctgcag--------------------------------------------------------------------------------------------------
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GCTGTGGAAGAAGCCCAGAGAGCCATTAACGCTGCACATGTGGAGGTTGAAAGTGTTGAAAATGGAGTTGGAATTGTCAAGCTGATGGGCAGATACAGTGgtaaacagta-gtttcttctctttttgtattgcaattctaattttctaaataattttattcaatgaaatgacaaaaaatgggagctttttcctatgaatgaaatattggtattagatctttaagcatcatatttctcttttcagagatatactttacaagcttccatatgcag
upper sequence: AT5G61580.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv16s0013g01140.t01 (Vitis vinifera), 5'ss of exon 9
GCGGTTGAGGAAGCACAACGAGCTATTAATGCTGCACATGTAGAGGTCGAGAGCGTGGAAAATGGAGTTGGTATCGTTAAACTCATGGGCAGATACAGTGgt-aaatattctgtgacatatgttgatt-actttcttttgtgaatacgaagttaact---tgtggtacaaattctgcag--------------------------
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GCTGTTGAGGAAGCTCAGAGAGCAATCAATGCTGCACATGTGGAAGTTGAAAGTGTAGAAAATGGAGTTGGAATTGTAAAACTTATGGGCCGATATAGCGgttagagagttagcattatatactgaaggacatatctatagttataggatcttcaatatcttcttttcttattctgtgtttaatgtttgttaacatttcctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125095301|gb|EL152494.1|EL152494EST: GAGCGTGGAAAATGGAGTTGGTATCGTTAAACTCATGGGCAGATACAGTG GTTTTTATTGCCATGATTGCAACTTTAGCGAATCGTGATGTGGATT
genomic: GAGCGTGGAAAATGGAGTTGGTATCGTTAAACTCATGGGCAGATACAGTGgtaaatattc ... aattctgcagGTTTT-ATTGCCATGATTGCAACTTTAGCGAATCGTGATGTGGATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCGGTTGAGGAAGCACAACGAGCTATTAATGCTGCACATGTAGAGGTCGAGAGCGTGGAAAATGGAGTTGGTATCGTTAAACTCATGGGCAGATACAGTGgtaaatattctgtgacatatgttgattactttcttttgtgaatacgaagttaacttgtggtacaaattctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT