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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAAGCTGCCTCCAAATATTCCACTGTCGATACTCTTAAGCAGCAGTATCGGTTTGTTGCCGCTAAATACAAGgtaccttatttacatcacagagcggggtagatagatagtagcaatcacataagagagttttatcttttttgactataatggccctaatttcatcactgtgacag

Basic information

species Arabidopsis thaliana
transcript AT5G60990.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G60990.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv11s0065g01090.t01 (Vitis vinifera), 5'ss of exon 9
ATTGAAGCTGCCTCCAAATATTCCACTGTCGATACTCTTAAGCAGCAGTATCGGTTTGTTGCCGCTAAATACAAGgtaccttatttacatcacagagcggggtagatagatagtagcaatcacataagagagttttatcttttttgactataatggccctaatttcatcactgtgacag
||||| | ||| || |||||||||||||| ||||| || ||||| |||||||| |||||| | ||||| ||||||||  |||  || |||                 | |  ||    |  |      ||  |    |    || |  |   |       || | | | || | |    
ATTGAGGTTGCATCTAAATATTCCACTGTTGATACACTCAAGCAACAGTATCGCTTTGTTCCTGCTAAGTACAAGgtttcttgctttcatactgttatattactttgaaaatgttatgagaaagattaagcttgcagttgacttagtttccgactatagaaagtgctttacagcg----

upper sequence: AT5G60990.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv01s0010g01890.t01 (Vitis vinifera), 5'ss of exon 7
ATTGAAGCTGCCTCCAAATATTCCACTGTCGATACTCTTAAGCAGCAGTATCGGTTTGTTGCCGCTAAATACAAGgtaccttatttacatcacagagcggggtagatagatagtagcaatcacataagagagttttatctt--ttttgactataatggccctaatttcatcactgtgacag
||||| ||||  || |||||||||||||| ||||| || ||||| |||||||| |||||| | ||||| ||||||||  |||  || ||| || |       ||  | || | |   |  |  |  |   || ||    ||   || |  |   |       || | | | || |      
ATTGAGGCTGGATCTAAATATTCCACTGTTGATACACTCAAGCAACAGTATCGCTTTGTTCCTGCTAAGTACAAGgtttcttgctttcat-actgt-tatattactttgaaaatgttatgcgaaagattaagcttgcagttgacttagtttccgactatagaaagtgctttacagca----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124917621|gb|EH991495.1|EH991495
EST:     CTGTCGATACTCTTAAGCAGCAGTATCGGTTTGTTGCCGCTAAATACAAG                         GATTGCTATCTGGTATACATT
genomic: CTGTCGATACTCTTAAGCAGCAGTATCGGTTTGTTGCCGCTAAATACAAGgtaccttatt ... actgtgacagGATTGCTATCTGGTATACATT