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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGGTCGATCTTCTGCTGCTTCTACTGCTGTTTCCATTGTTGATGCTATAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttcttttacactcatttggataacaataagatagattggttcaagttttaacagggttgtgttaatgtaaatttag

Basic information

species Arabidopsis thaliana
transcript AT5G58330.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58330.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G34150.2 (Glycine max), 5'ss of exon 10
-----------------------ATGGGGTCGATCTTCTGCTGCTTCTACTGCTGTTTCCATTGTTGATGCTATAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttcttttacactcatttggataacaataagatagattggttcaagttttaacagggttgtgttaatgtaaatttag
                       ||||||  |||| || ||||| || ||| |||| || ||||||||||| ||||  ||| | |||||||||||||| |||||||||||||||||  |||| |||  |      | | | | | |||  ||||   |   |  ||| ||| ||   |||   | ||| | | |            
AGAGGTGGTGCACTTATTCAAAAATGGGGAAGATCATCAGCTGCATCAACTTCTGTGTCAATTGTTGATGCCATAAGATCTTTAgtaactcctactcccgagggtgattggttttcttctggtgtaagt------tgatatt-agttgagtaacctca---tgtatttgttaaaaaattagatgagtttt-tcag-----------

upper sequence: AT5G58330.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G34150.3 (Glycine max), 5'ss of exon 10
ATGGGGTCGATCTTCTGCTGCTTCTACTGCTGTTTCCATTGTTGATGCTATAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttcttt-------tacactcatttggataacaataagatagattggtt------caagttttaacagggttgtgtta-atgtaaatttag---
||||||  |||| || ||||| || ||| |||| || ||||||||||| ||||  ||| | |||||||||||||| |||||||||||||||||  |||| |||  |     ||       ||  ||||| |   |   || ||  |||||  |||      ||||  |  ||   ||| |   | |  |  |||||    
ATGGGGAAGATCATCAGCTGCATCAACTTCTGTGTCAATTGTTGATGCCATAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGTgtaagttgatattagttgagtaacctcatgtatttgttaaaaaattagatgagtttttcagcaagactacaccttgttttacaacaaatcgatttaactg

upper sequence: AT5G58330.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA20G33380.1 (Glycine max), 5'ss of exon 12
ATGGGGTCGATCTTCTGCTGCTTCTACTGCTGTTTCCATTGTTGATGCTATAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttcttt-------tacactcatttggataacaataagatagattggttca--agttttaacaggg-ttgtgttaatgtaaatttag-------
||||||  |||| || ||||| || ||| |||| || ||||||||||| ||||  ||| | |||||||||||||| |||||||||||||||||  |||| |||  |     ||       ||  ||||| |   |   || ||  |||||  |||    ||    || |    |||| |||    |||||          
ATGGGGAAGATCATCAGCTGCATCAACTTCTGTGTCAATTGTTGATGCCATAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGTgtaagttgatattagttgaataacctcatgtatttgttaaaaaattagatgagtttttcagcaagaatacaccttgttttacaacaaattgttttaactg

upper sequence: AT5G58330.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv13s0019g05250.t01 (Vitis vinifera), 5'ss of exon 10
ATGGGGTCGATCTTCTGCTGCTTCTACTGCTGTTTCCATTGTTGATGCTATAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttcttttacactcatttggataacaataagatagattggt-tcaagttttaacagggttg--tgttaatgtaaatttag--------------------------------------------------------------------------------------------------
||||||  ||||||||||||| || |||||||| || || |||||||| || |||||||| |||||||| || ||||||||||||||||||||  |||| |||  | ||| | | | |  || ||| |     |    | | || || | | ||   ||  |   |   | ||     |||  ||                                                                                                   
ATGGGGGAGATCTTCTGCTGCATCAACTGCTGTGTCGATCGTTGATGCCATGAAGTCTCTAGTAACTCCCACCCCTGAGGGTGATTGGTTTTCTTCTGGAgtaagttttcatctgc-cgtatatggttgctgttctatttggttagtcttatgtaagaaatgaactagatctttccacaaacgtattgtttaagatcatatataatagtaggttgctgcagttgcatttttgtttatgattagttgttagtctccagtctcaccatttcaaacctcaaatatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080979|gb|DR376736.1|DR376736
EST:     TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGG                         GTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
genomic: TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
EST: gi|86078149|gb|DR373906.1|DR373906
EST:     TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGG                         GTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
genomic: TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
EST: gi|124771297|gb|EH861427.1|EH861427
EST:     AAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGG                         GTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
genomic: AAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
EST: gi|124878258|gb|EH957695.1|EH957695
EST:     GAGGGTGATTGGTTTTCGACTGGG                         GTGTACACGGATGGGAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
genomic: GAGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
EST: gi|86081501|gb|DR377258.1|DR377258
EST:     TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGG                         GTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
genomic: TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
EST: gi|124766859|gb|EH856989.1|EH856989
EST:     AGGGTGATTGGTTTTCGACTGGG                         GTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
genomic: AGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
EST: gi|116454053|gb|EG496645.1|EG496645
EST:     TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGG                         GTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
genomic: TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
EST: gi|125280515|gb|EL294600.1|EL294600
EST:     TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGG                         GTGTACACGGATGGAAATCCTTA
genomic: TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTA