Sequence
atgc intronic sequence ATGC exonic sequenceATCGATGTTTACTCGTTTGGGATTGTAATGTGGGAACTACTCACTGGTGAAGAACCATACGCAGACATGCATTGTGCTTCCATAATTGgtaactacacctgtcttgcttatcttttgtatgtatacctgtgaatgatatagagttatggtactaagacatgtagattgatgtttctatgacag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G57610.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G57610.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os02g54510.3 (Oryza sativa), 5'ss of exon 8
ATCGATGTTTACTCGTTTGGGATTGTAATGTGGGAACTACTCACTGGTGAAGAACCATACGCAGACATGCATTGTGCTTCCATAATTGgtaact----acacctgtcttgcttatcttttgtatgtatacctgtgaatgatatagagttatggtactaagacatgtagattgat-gtttctatgacag
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ATTGATGTATACTCGTTTGGTATTGTGATGTGGGAGCTGCTTACTGGCGAAGAACCATATTCTGATATGCGTGCTGCTGCTATTATTGgtaattttcaaaatttccactagtaagctttatcaattatcacagtgacttgtttcctgattgcgaattccatcatgtccacccttcatgtttagcgcat
upper sequence: AT5G57610.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv11s0052g01480.t01 (Vitis vinifera), 5'ss of exon 7
ATCGATGTTTACTCGTTTGGGATTGTAATGTGGGAACTACTCACTGGTGAAGAACCATACGCAGACATGCATTGTGCTTCCATAATTGgtaa---ctacacctgt-cttgcttatcttttgtatgtatacctgtga-atgatatagagttatggtactaagacatgtagattgatgtttctatgacag--
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ATTGATGTATACTCATTTGGAATTGTGATGTGGGAATTGCTTACTGGGGACGAACCTTATGCAGATATGCATTGTGCTTCTATAATTGgtaggagctatattgaaacataactatatgttctgttt-catttacaacgtaatttgtttctattcttcctgatcttg-atatgcatgtggtcattatcatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124825253|gb|EH910119.1|EH910119EST: ACTCACTGGTGAAGAACCATACGCAGACATGCATTGTGCTTCCATAATTG GAGGTATAGTGAACAACGCATTGCGTCCAAAAA
genomic: ACTCACTGGTGAAGAACCATACGCAGACATGCATTGTGCTTCCATAATTGgtaactacac ... tctatgacagGAGGTATAGTGAACAACGCATTGCGTCCAAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCGATGTTTACTCGTTTGGGATTGTAATGTGGGAACTACTCACTGGTGAAGAACCATACGCAGACATGCATTGTGCTTCCATAATTGgtaactacacctgtcttgcttatcttttgtatgtatacctgtgaatgatatagagttatggtactaagacatgtagattgatgtttctatgacag
- - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAC