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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCCACATGCTGTCCAATGGATGAGGCCTGAAGTTCAAGAAGGATGTGATGTTTCTGACTGGTTCAACATTCTGGTGCTTCATCAAAATAGgttgattccattgctataacatcttttagatcgttttcttactcattctgtatcagaaaatttgatactgtattcatatgacttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G54260.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os04g54340.1 (Oryza sativa), 5'ss of exon 8
ACCCCACATGCTGTCCAATGGATGAGGCCTGAAGTTCAAGA-AGGATGTGATGTTTCTGACTGGTTCAACATTCTGGTGCTTCATCAAAATAGgt--------tgattccattgctataacatcttttaga---tcgttttcttactcattctgtatcagaa---aatttgatactgtattcatatgacttgcag------------------------------
|| || |||||||| ||||||||| | ||||||  ||||||  | |||| | || |||||||||||||| ||||| || |||||||| |||||||        ||| |  || |  | ||  | |  | ||   ||  | ||| |||  |||  |||        | |||  ||   | |||||    ||| | |                              
ACACCTCATGCTGTACAATGGATGCGACCTGAAACTCAAGATGGAATGTCA-GTATCTGACTGGTTCAATATTCTTGTTCTTCATCAGAATAGgtatgggcggtgaatgaatggtgacaaactgtagtggaatgtcagtatctgactggttcaatattcttgttcatttttttataatcttcatgccgcttactgaaaagaaaattgaaacctgaaatcatacag

upper sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA12G34750.1 (Glycine max), 5'ss of exon 3
ACCCCACATGCTGTCCAATGGATGAGGCCTGAAGTTCAAGAAGGATGTGATGTTTCTGACTGGTTCAACATTCTGGTGCTTCATCAAAATAGgttgattccattgctataacatcttttagatcgttttcttactcattctgtatcagaaaatttgatactgtattcatatgacttgcag
|| || |||||||| ||||||||| | ||||||  ||| ||||| ||| | || ||||| |||||||||||||| || |||||||| || |||||   ||      | |  | | ||||||   |||   ||    ||     ||||   ||                            
ACACCGCATGCTGTTCAATGGATGCGACCTGAATCTCAGGAAGGGTGTCAAgtgtctgattggttcaacattcttgtacttcatcagaacaggttatgtcttcctgtctgtc-tattttaggaggttgcatttaatatcactcatcaatgaa----------------------------

upper sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 7
ACCCCACATGCTGTCCAATGGATGAGGCCTGAAGTTCAAGAAGGATGTGATGTTTCTGACTGGTTCAACATTCTGGTGCTTCATCAAAATAGgttgattccattgctataacatctt-ttagatcgttttcttactcattctgtatcagaaaatt-tgatactgt--attcatatgacttgcag--------
|| ||||||||||| |||||||||  ||| |||| ||||||||| ||| | || || ||||||||||||||| |||| ||||||||||| ||||||      || || | | ||  | ||||||| |  ||  |   |     | |   |  ||| ||| | | |  |    | |  ||    |        
ACACCACATGCTGTGCAATGGATGCAGCCCGAAGCTCAAGAAGGGTGTCAAGTGTCAGACTGGTTCAACATTTTGGTACTTCATCAAAACAGgttgtacttttttctctgagattctattagatcatgctcaaagagaaaagatcttgaattattgtgacattatcaaagtctctagctattgggcatttac