Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCTAAGAAGTTCTTCCCCGAGTTAGCGGTTGGGTTTGACGATCCTCGTGTTCAACTTCACATTGGTGATGgtaattaagcattcttctacttgttctctgttcacaaaacgtagtcaaaaatttgcttgtgttgatatcactttcctctggcag

Basic information

species Arabidopsis thaliana
transcript AT5G53120.4
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G53120.4 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G120578_T02 (Zea mays), 5'ss of exon 6
GTGTCTAAGAAGTTCTTCCCCGAGTTAGCGGTTGGGTTTGACGATCCTCGTGTTCAACTTCACATTGGTGATGgtaattaagcattcttct-----------act-tgttctctgttcaca--aaacgtagtcaaaaatttgcttgtgtt---gatatcact--ttcctctggcag-----------------------------------------------
 | |  ||| | ||||||||  | ||  | ||||| ||||| ||||||||||||||||||||  ||||||| ||||  |    | ||   |           ||| |||| | |||| | |     ||    |  |  ||| ||  ||||   |||||   |  | | |   |                                                  
ATCTGCAAGGAATTCTTCCCACATTTGTCTGTTGGATTTGAAGATCCTCGTGTTCAACTTCATGTTGGTGACGgtatgttgataatcccatgagccatgatgactatgttatttgttgatatctgccgattgctgaggtttcctgttgttttagatattggtaatcctttcagtttgtgagctctaattccatatgtaacaattgtttttcttccactttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829276|gb|CK118960.1|CK118960
EST:     GTTAGCGGTTGGGTTTGACGATCCTCGTGTTCAACTTCACATTGGTGATG                         CTGCTGAGTTCCTCCGTAAATCCCCTGAAGGGAAGTATGATGCCATCATTG
genomic: GTTAGCGGTTGGGTTTGACGATCCTCGTGTTCAACTTCACATTGGTGATGgtaattaagc ... cctctggcagCTGCTGAGTTCCTCCGTAAATCCCCTGAAGGGAAGTATGATGCCATCATTG
EST: gi|86080625|gb|DR376382.1|DR376382
EST:     GTTAGCGGTTGGGTTTGACGATCCTCGTGTTCAACTTCACATTGGTGATG                         CTGCTGAGTTCCTCCGTAAATCCCYTGAAGGGAAGTATGATGCCATCATTG
genomic: GTTAGCGGTTGGGTTTGACGATCCTCGTGTTCAACTTCACATTGGTGATGgtaattaagc ... cctctggcagCTGCTGAGTTCCTCCGTAAATCCCCTGAAGGGAAGTATGATGCCATCATTG
EST: gi|86079304|gb|DR375061.1|DR375061
EST:     GTTAGCGGTTGGGTTTGACGATCCTCGTGTTCAACTTCACATTAGTGATG                         CTGCTGAGTTCCTCCGTAAATCCCCTGAAGGGAAGTATGATGCCATCATTG
genomic: GTTAGCGGTTGGGTTTGACGATCCTCGTGTTCAACTTCACATTGGTGATGgtaattaagc ... cctctggcagCTGCTGAGTTCCTCCGTAAATCCCCTGAAGGGAAGTATGATGCCATCATTG
EST: gi|47831735|gb|CK121419.1|CK121419
EST:     GTTAGCGGTTGGGTTTGACGATCCTCGTGTTCAACTTCACATTGGTGATG                         CTGCTGAGTTCCTCCGTAAATCCCCTGAAGGGAAGTATGATGCCATCATTG
genomic: GTTAGCGGTTGGGTTTGACGATCCTCGTGTTCAACTTCACATTGGTGATGgtaattaagc ... cctctggcagCTGCTGAGTTCCTCCGTAAATCCCCTGAAGGGAAGTATGATGCCATCATTG