1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTCATCCAACTCCAACCCGGGCAGAGGTCTCAGACATTGCTATCGCTGTTAGAGAAGGTGCTGATGCGGTAATGCTTTCAGGAGAAACTGCTCACGGAAAgtaagtggcagtatcttttcatgtactctattgatttagcttataatggcattgaatgtttattatatgcatgaatctcaactttacttgatatcag
species | Arabidopsis thaliana |
transcript | AT5G52920.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGAGAAACTGCTCACGGAAA GTTCCCATTGAAAGCTGCTGGAGTGATGCACACTGTTEST: gi|124904751|gb|EH978831.1|EH978831
genomic: GGAGAAACTGCTCACGGAAAgtaagtggca ... ttgatatcagGTTCCCATTGAAAGCTGCTGGAGTGATGCACACTGTT
EST: AGAGAAGGTGCTGATGCGGTAATGCTTTCAGGAGAAACTGCTCACGGAAA GTTCCCATTGAAAGCTEST: gi|125208394|gb|EL223348.1|EL223348
genomic: AGAGAAGGTGCTGATGCGGTAATGCTTTCAGGAGAAACTGCTCACGGAAAgtaagtggca ... ttgatatcagGTTCCCATTGAAAGCT
EST: GCGGTAATGCTTTCAGGAGAAACTGCTCACGGAAA GTTCCCATTGAAAGCTGCTGGAGTGATGCACACTGTTGCATTGCGAACAGAEST: gi|125101581|gb|EL156649.1|EL156649
genomic: GCGGTAATGCTTTCAGGAGAAACTGCTCACGGAAAgtaagtggca ... ttgatatcagGTTCCCATTGAAAGCTGCTGGAGTGATGCACACTGTTGCATTGCGAACAGA
EST: AGAGAAGGTGCTGATGCGGTAATGCTTTCAGGAGAAACTGCTCACGGAAA GTTCCCATTGAAAGCTGCTG
genomic: AGAGAAGGTGCTGATGCGGTAATGCTTTCAGGAGAAACTGCTCACGGAAAgtaagtggca ... ttgatatcagGTTCCCATTGAAAGCTGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCATCCAACTCCAACCCGGGCAGAGGTCTCAGACATTGCTATCGCTGTTAGAGAAGGTGCTGATGCGGTAATGCTTTCAGGAGAAACTGCTCACGGAAAgtaagtggcagtatcttttcatgtactctattgatttagcttataatggcattgaatgtttattatatgcatgaatctcaactttacttgatatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA