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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAATTACAGCAGTGGTCAGCCTGCTCCTGAAACCATTACTGACAAAATATATGGAAATACACTTTCAgtaagtatctggtcaagtttgattgacttcactagctaagtttttccttcgtgatcactgaaaattgtggcgttctgtcaatgtttttgtataatggtctcgtctctggtacacattttcag

Basic information

species Arabidopsis thaliana
transcript AT5G51820.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G51820.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G38590.1 (Glycine max), 5'ss of exon 8
TTCAATTACAGCAGTGGTCAGCCTGCTCCTGAAACCATTACTGACAAAATATATGGAAATACACTTTCAgtaagtatctggtca--agtttgattgacttcactagctaagtttttccttcgtgatcactgaaaattgtggcgttctgtcaatgtttttgtataatggtctcgtctctggtacacattttcag
|| |||||||||||||| || ||||| || ||| |||| |||||||| || ||||||||||| || || |||||| |    | |  | |    |     | ||||    | | || | ||  || ||  | |||    || | || |  | | ||| |  | |  | |  |                      
TTTAATTACAGCAGTGGACAACCTGCACCAGAATCCATCACTGACAAGATTTATGGAAATACCCTGTCGgtaagtgttccattattattcaagtaagacttactattccaatcttacatt-atgttctttaaaatgcttgac-ttgtacctaggttgtctttttgtaggat----------------------

upper sequence: AT5G51820.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv16s0022g02320.t01 (Vitis vinifera), 5'ss of exon 8
TTCAATTACAGCAGTGGTCAGCCTGCTCCTGAAACCATTACTGACAAAATATATGGAAATACACTTTCAgtaagtatctggtcaagtttgat-tgacttcactagctaagtttttccttcgtgatcactgaaaattgtggcgttctgt-caatgtttttgtataatggtctcgtctctggtacacattttcag
|| |||||||||||||| || ||||| ||||||||||| || ||||| || ||||| || || ||||| ||| |  |    ||   ||| || |   ||   |  | | ||||| |     | ||  || |    | |    || |||  |  |  ||| | | ||  |||| | |                 
TTTAATTACAGCAGTGGACAACCTGCACCTGAAACCATCACAGACAAGATTTATGGGAACACTCTTTCGgtatggttgcaatc---tttaatgtccttttgttctccatgttttcc-----taattgcttattgcttttatcttgtgtatagggcatttatttcattatctcatttt----------------