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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGACAAAATGGGATGTAGGAGATACTTGACGGCGAAAGATATTGTTGAGGGTTCTCCAAATCTTAATCTTGCTTTTGTAGCACATATATTCCAGCACAGgtgaaatacacttcaatattaaaaacagttcatgtaaaagggaacatttttagtgtgggtctaacagatcagaactatgttttctttctttcccgcag

Basic information

species Arabidopsis thaliana
transcript AT5G48460.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48460.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA03G22450.1 (Glycine max), 5'ss of exon 9
CAGACAAAATGGGATGTAGGAGATACTTGACGGCGAAAGATATTGTTGAGGGTTCTCCAAATCTTAATCTTGCTTTTGTAGCACATATATTCCAGCACAGgtga-aata-----cacttcaatattaaaaacagttcatgtaaaagg-gaacatttttagtgtgggtctaacagatcagaactatgttttctttctttcccgcag
| || || ||||| || | | ||||||| || || | ||| || || || || || ||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||     ||  | || ||| | |||| ||||| |    |  |   ||   ||         ||| | ||  | |  ||  || |   |||||      
CTGATAAGATGGGTTGCAAGCGATACTTAACTGCAAGAGACATAGTGGAAGGATCACCAAATCTTAATCTTGCCTTTGTTGCACATATTTTCCAGCACAGgtgagaataaccaccatctaaacatttagaacatttcattttttggatgtggatagataaatccaaaataaaaaat--ggaacataattccaggctttcatt---

upper sequence: AT5G48460.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA08G45800.1 (Glycine max), 5'ss of exon 8
CAGACAAAATGGGATGTAGGAGATACTTGACGGCGAAAGATATTGTTGAGGGTTCTCCAAATCTTAATCTTGCTTTTGTAGCACATATATTCCAGCACAGgtga-aatacacttcaatattaaaaaca----gttcatgtaaaagggaacattttt-agtgtgggtctaacagatca-gaactatgttttctttctttcccgcag
| || || ||||| || | | ||||| | || || | |||||| || || ||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||| ||||  | |   |||| |  |||     ||  |  |||| |   ||||||  |||  | |    | |   ||  || ||    ||  || |   |     
CTGATAAGATGGGCTGCAAGCGATACATAACTGCAAGAGATATAGTGGAAGGTTCCCCAAATCTTAACCTTGCTTTTGTTGCACATATTTTCCAACACAGgtgataataatcctttctattgagcacatgttattttttcaaaatgtttcattttcgagttggtgatagataagccataaaatagaacttaattttaggc-----

upper sequence: AT5G48460.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA16G09360.1 (Glycine max), 5'ss of exon 8
CAGACAAAATGGGATGTAGGAGATACTTGACGGCGAAAGATATTGTTGAGGGTTCTCCAAATCTTAATCTTGCTTTTGTAGCACATATATTCCAGCACAGgtgaa-------atacacttc---aatattaaaa-acagttcatgtaaaagggaacatttttagtgtg-ggtctaacagatcagaactatgttttctttctttcccgcag
| || || ||||| || | | ||||||| || |||| ||| || || || || || ||||||||||||||||| ||||| || ||||| |||||||||||||||        || | ||||   | ||||| |  |     ||||||||      ||||||| |  || ||    | | | || ||  |  |     ||           
CTGATAAGATGGGTTGCAAGCGATACTTAACTGCGAGAGACATAGTGGAAGGATCCCCAAATCTTAATCTTGCCTTTGTTGCTCATATTTTCCAGCACAGgtgagaataaccatcctcttctcaagtattatattattaagcatgtaaatcatttcatttttgggttgtggatggataaagcaaaaaaaaatggaactta----------

upper sequence: AT5G48460.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv00s1365g00010.t01 (Vitis vinifera), 5'ss of exon 6
CAGACAAAATGGGATGTAGGAGATACTTGACGGCGAAAGATATTGTTGAGGGTTCTCCAAATCTTAATCTTGCTTTTGTAGCACATATATTCCAGCACAGgtgaa-atacacttcaatattaaaaac-agttc-atgtaaaagggaacatttttagtgtgggtctaaca--gatcagaactatgttttctttctttcccgcag
|||| |  ||||| || | ||||||||| || || ||||||||||| || ||||||||||||||||| ||||||||||| |||||  | || || || ||||||  ||  |      ||  |  |   ||||| || ||||     ||  ||  | | || ||   | |   | |   |  | ||||  |    |||  |   
CAGATAGGATGGGTTGCAAGAGATACTTAACCGCAAAAGATATTGTGGAAGGTTCTCCAAATCTTAACCTTGCTTTTGTTGCACACGTTTTTCAACATAGgtgaggatggatccttttacgagcagttagttccatttaaatatttactcttggattttgagttggatataaacctctatgaggtttcataatcttcaag---