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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGATATGGACAGTACAAATGTCTACGCTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcactttcattatttctcactagttacgtatgaaagaagtaatgtctttttttttgttattaattagggtttctggttaaaatttgttcttag

Basic information

species Arabidopsis thaliana
transcript AT5G46110.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G46110.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 5'ss of exon 8
ACTGATATGGACAGTACAAATGTCTACGCTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcactttcatt---atttctcactagttacgtatgaaagaagtaatgtctttttttttgttattaattagggtttctggttaaaatttgttcttag
||||| ||||||||||| ||| |||| ||||| || |||||||| || ||| | ||||||||||| || ||  |||| || |   ||   | |||     | ||     |||  |  |   | || |||  |     |||   |  ||   |   || |    ||| |            
ACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaacatgatttgagatccttgagggttttgattcctaaaactaaaataacagtttccatactt---tcatgtctgattttacag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124783575|gb|EH873407.1|EH873407
EST:     CACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
genomic: CACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: gi|116415580|gb|EG458172.1|EG458172
EST:     CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTG
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTG
EST: gi|124785029|gb|EH874708.1|EH874708
EST:     CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTACCTAAACTACTTAACCATGGTTTCGCCGACGCGATT
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGT-CCTAAACTACTTAACCATGGTTTCGCCGACGCGATT
EST: gi|164236389|gb|ES079547.1|ES079547
EST:     CACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAA
genomic: CACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTG-AAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAA
EST: gi|164189198|gb|ES172250.1|ES172250
EST:     CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTA
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTA
EST: gi|125261989|gb|EL276074.1|EL276074
EST:     ATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
genomic: ATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: gi|124925636|gb|EL003589.1|EL003589
EST:     TTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
genomic: TTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: gi|124824738|gb|EH909604.1|EH909604
EST:     TCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTACT-AACCATGGTTTCGCCGACGCGATTGCTAAA
genomic: TCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: gi|125050014|gb|EL122283.1|EL122283
EST:     CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCC
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCC
EST: gi|164018672|gb|EL972834.1|EL972834
EST:     CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGA
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGA
EST: gi|124892781|gb|EH971683.1|EH971683
EST:     CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATT
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATT
EST: gi|125020342|gb|EL092611.1|EL092611
EST:     TCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
genomic: TCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: gi|125150685|gb|EL183202.1|EL183202
EST:     CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTACTTAACCA
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCA
EST: gi|124909638|gb|EH983718.1|EH983718
EST:     ATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
genomic: ATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: gi|125285764|gb|EL299849.1|EL299849
EST:     TACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
genomic: TACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: gi|125271325|gb|EL285410.1|EL285410
EST:     CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTA
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTA
EST: gi|125320111|gb|EL334196.1|EL334196
EST:     CATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAA
genomic: CATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAA
EST: gi|124911995|gb|EH986075.1|EH986075
EST:     CGCACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
genomic: CGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: gi|124879254|gb|EH958691.1|EH958691
EST:     CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTACTTAA
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAA
EST: gi|124836656|gb|EH921095.1|EH921095
EST:     TACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC                         GTTGAAGGTCCTAAACTACTTAACCATGGTTTCNCCGACGCGATTGCTAAA
genomic: TACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA