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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGTGCAGTACCCAGAGGAAGCCCCGTGGTATGAGCTGCTTGTAATCCCTTTGCGGTTTGAACTCCTATGTTCCATCATGATACCCATCTCCATTAAGgtagtttaaacttcctttctatactatctggaaattctggtaactctcttactagctctggagtgagacatagaatgcattaaccgacttcttggcatgt...

Basic information

species Arabidopsis thaliana
transcript AT5G44240.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G44240.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA12G33340.1 (Glycine max), 5'ss of exon 9
GTATGTGCAGTACCCAGAGGAAGCCCCGTGGTATGAGCTGCTTGTAATCCCTTTGCGGTTTGAACTCCTATGTTCCATCATGATACCCATCTCCATTAAGgtagtttaaacttcct--ttctatactatctggaaattctggtaactctcttactagctctggagtgagacatagaatgcattaaccgacttcttggcatgt
|||||| |  |||||  | ||||  || |||||||| ||| | || ||||||||||| || || || || |||||||||||||||||||| || ||||||||     |   ||     ||    | ||| |  |   | || || |    |   |  |  |  | | | |  || |    |  || |    | || |     
GTATGTTCTTTACCCTCATGAAGGTCCCTGGTATGAACTGTTGGTCATCCCTTTGCGATTCGAGCTTCTTTGTTCCATCATGATACCCATTTCAATTAAGgtgagccagtgttaaaggtttggcattatatacattatatgata-caacatgcttgtcatttaattaacagttatagcatagaaagcagagtgttagtcct-

upper sequence: AT5G44240.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA13G37090.1 (Glycine max), 5'ss of exon 9
GTATGTGCAGTACCCAGAGGAAGCCCCGTGGTATGAGCTGCTTGTAATCCCTTTGCGGTTTGAACTCCTATGTTCCATCATGATACCCATCTCCATTAAGgtag-------tttaaacttcctttctatactatctggaaattctggtaactctcttactagctctggagtgagacatagaatgcattaaccgacttcttggcatgt
|||||| |  |||||  | ||||  || |||||||| ||| | || || |||||||| ||||| || || |||||||||||||||||||| || ||||||||         || ||  ||      ||||     |    ||| | |  ||    |   |  |  |    | | |   | |    |  || |    | ||       
GTATGTTCTTTACCCTCATGAAGGTCCCTGGTATGAACTGTTGGTCATTCCTTTGCGATTTGAGCTTCTTTGTTCCATCATGATACCCATTTCAATTAAGgtgagctggcattaaaggtttggcattatatacattaatgattattgatacaacatgcttgtcatttagataacagtcatagcatagaaagcagagtttt-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164181758|gb|ES053710.1|ES053710
EST:     GATACCCATCTCCATTAAG                         GTGTCTCTAGTATCTCGTTAAGGGTCTATATGCAAAATTTATAGAATGGGA
genomic: GATACCCATCTCCATTAAGgtagtttaaa ... aatgtggcagGTGTCTCTAG-ATCTCGTTAAGGGTCTTTATGCAAAATTTATAGAATGGGA