Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCGATGGCGACCATGATTTCCTTATTGATAAGGAAAATCTCATCAAATATGGTAATCATGCCCTTACCTACAGGATTGTCGACAGAATATTTTCACAGgttggctccagttgtcaaaatgttaatgaacacttttctcgaaacttaattgttatcttatggagtgtgtttccttctttcttaattgaaattacggctgtctctcactcag

Basic information

species Arabidopsis thaliana
transcript AT5G44090.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G44090.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G148323_T01 (Zea mays), 5'ss of exon 8
ACTCGATGGCGACCATGATTTCCTTATTGATAAGGAAAATCTCATCAAATATGGTAATCATGCCCTTACCTACAGGATTGTCGACAGAATATTTTCACAGgttggctccagttgtcaaaatgttaatgaacacttttctcgaaacttaattgttatcttatggagtgtgtttccttctttcttaattgaaattacggctgtctctcactcag
 || ||||  ||||| |||||  | ||||||||||||||||||||||||||||| || ||| |  | ||||| || || || || ||||| ||  |||||||| |      |  ||||  |    || || || ||   |    ||| |||   |   | |    |||| ||  |    |  || |||    |    |||  | |       
GCTGGATGCAGACCACGATTTTTTGATTGATAAGGAAAATCTCATCAAATATGGGAACCATTCGTTGACCTATAGAATAGTTGATAGAATTTTCGCACAGgttagtc----tactcaattttagcatcaaaaccttagcc----ctttattaccaaaatgt----tgtgctttgtgtccttata-ttggcccttttactgcttttag-----

upper sequence: AT5G44090.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv07s0005g03730.t01 (Vitis vinifera), 5'ss of exon 9
ACTCGATGGCGACCATGATTTCCTTATTGATAAGGAAAATCTCATCAAATATGGTAATCATGCCCTTACCTACAGGATTGTCGACAGAATATTTTCACAGgttggctccagttgt----------caaaatgtt-------aatgaacacttttctcgaaacttaattgttatcttatggagtgtgtttccttct--ttcttaattgaaattacggctgtctctcactcag
 || ||    || ||||||||| | ||||| || || |||||||||| ||||||||||||||| |||||||||||||| || || |||||||||||||||||| |||    |  |          |||||  ||       ||| || |  |   |  ||    ||     ||  |||| |   ||  |  |||    | ||  ||     | |  |  |      |||||
GCTGGACACAGATCATGATTTCTTGATTGACAAAGAGAATCTCATCAGATATGGTAATCATGCTCTTACCTACAGGATCGTTGATAGAATATTTTCACAGgtttgcttttatcttggaatatttccaaaagattcagattaaattaataactgctttaaagtagaagcaacatgctatgtaaaatgactttttccaccttttggttttttgtgcttcaattatcttctcag