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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGACAACGGTACACGAAAAGGTTGAATGAGAAGCAGATTACTGCTCTCTTGAAAGTTACATGCCAAAGGCCGAGGGACAGAGAAAACGATATTTTGCGGgtatttttttagtcatgtatcttatatggttctttgtgagttagaacttagaagtgaggattaatcttgttgtcaaaaatgttttatag

Basic information

species Arabidopsis thaliana
transcript AT5G43810.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA02G00510.1 (Glycine max), 5'ss of exon 8
GGGACAACGGTACACGAAAAGGTTGAATGAGAAGCAGATTACTGCTCTCTTGAAAGTTACATGCCAAAGGCCGAGGGACAGAGAAAACGATATTTTGCGGgtatttttttagtcatgtatcttatatggttctttgtgagttagaacttagaagtgaggattaatcttgttgtcaaaaatgttttatag-------------
||||||||| || || |||||||||||||||||||| || ||||||||| |||||||||| || ||||| ||  | ||  ||||||| || ||||||| ||||||||    ||  || ||    ||   ||  ||   |        ||||   | |   ||     ||       |||| | | |                
GGGACAACGATATACAAAAAGGTTGAATGAGAAGCAAATCACTGCTCTCCTGAAAGTTACTTGTCAAAGACCTCGTGATCGAGAAAATGACATTTTGCAGgtattttgcctgttttgaattgattaatatttattcaaaac--agttttagcgttaaaagttctctctgcaacactaaatttatgactataagcagtaagct

upper sequence: AT5G43810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 9
GGGACAACGGTACACGAAAAGGTTGAATGAGAAGCAGATTACTGCTCTCTTGAAAGTTACATGCCAAAGGCCGAGGGACAGAGAAAACGATATTTTGCGGgtatttttttagtcatgtatcttatatggttctttgtga--gttagaacttagaagtgaggattaatcttgttgtcaaaaatg----ttttatag---------
||| ||||| || || ||||| |||||||||||||| ||||| ||||| ||||||||||| ||||| |||||  | ||  | ||||| || ||||| ||||| |||    | |  ||  ||||  |   |||  |   |     |   |||  |  | | | | ||||||      ||| |||      |  ||          
GGGGCAACGTTATACAAAAAGATTGAATGAGAAGCAAATTACGGCTCTATTGAAAGTTACTTGCCAGAGGCCTCGCGATCGGGAAAATGACATTTTACGGgtgttt----aattttgattctttgaaccttcactaccacaaccaagcctttcatttaatgttgaatcttcacaaaaaacatggccacctcctatccatttttt

upper sequence: AT5G43810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 9
GGGACAACGGTACACGAAAAGGTTGAATGAGAAGCAGATTACTGCTCTCTTGAAAGTTACATGCCAAAGGCCGAGGGACAGAGAAAACGATATTTTGCGGgtatttttttagtcatgtatcttatatggttctttgtga--gttagaacttagaagtgaggattaatcttgttgtcaaaaatg----ttttatag---------
||| ||||| || || ||||| |||||||||||||| ||||| ||||| ||||||||||| ||||| || ||  | ||  | ||||| || ||||| |||||||||    | |  ||  ||||  |   |||  |   |    ||   |||  |  | | | | ||  ||      ||| |||     ||  ||          
GGGGCAACGTTATACAAAAAGATTGAATGAGAAGCAAATTACAGCTCTGTTGAAAGTTACTTGCCAGAGACCTCGCGATCGGGAAAATGACATTTTACGGgtattt----aattttgattctttgaaccttcactacaacaactaatcctttcatttaatgttgaactttcacaaaaaacatggccacttcctaacccatgttt

upper sequence: AT5G43810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 8
GGGACAACGGTACACGAAAAGGTTGAATGAGAAGCAGATTACTGCTCTCTTGAAAGTTACATGCCAAAGGCCGAGGGACAGAGAAAACGATATTTTGCGGgtatttttttagtca-tgtatcttatatggttctttgtgagttagaa------cttagaagtgaggattaatcttgttgt-caaaaatgttttatag---
||| || ||||| || |||||||||||||||| ||| ||||||||||| || ||||||||||||||||| || |||||    ||||| |||||| ||| |||||||  |   ||| | | | | |         |   ||  |||        ||||| |     | |  |||   |  | |   | || ||| |     
GGGGCAGCGGTATACCAAAAGGTTGAATGAGAGGCAAATTACTGCTCTATTAAAAGTTACATGCCAAAGACCCAGGGATCAGGAAAATGATATTCTGCAGgtatttgctctttcagtctgtttgaaccaaacaatcaagatatagtttctgttcttagcatgataggtagatcgcttcatgcttcattgatttgtgctaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164058295|gb|ES120186.1|ES120186
EST:     TGAAAGTTACATGCCAAAGGCCGAGGGACAGAGAAAACGATATTTTGCGG                         ACTGTCCAACACAACG
genomic: TGAAAGTTACATGCCAAAGGCCGAGGGACAGAGAAAACGATATTTTGCGGgtattttttt ... tgttttatagACTGTCCAACACAACG