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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGCAAAGAATGCGGTGAGGGGACTATGGGCACGTCGTTCAAATCTCGACTTGGTTGGTGCTCACATCAATGTCTTTACAGGTGAATGGACACAGAAGgtaacaaaaaatggcttctgtatatgtcagaagaactacggtttgatgaactttgcttcaacaaactaattagtctttttttgtcacccaaattctaaaatggtagtgtttacttggcag

Basic information

species Arabidopsis thaliana
transcript AT5G43710.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os01g56670.3 (Oryza sativa), 5'ss of exon 8
AGTTGCAAAGAATGCGGTGAGGGGACTATGGGCACGTCGTTCAAATCTCGACTTGGTTGGTGCTCACATCAATGTCTTTACAGGTGAATGGACACAGAAGgtaacaaaaaatggcttctgtatatgtcagaagaactacggtttgatgaactttgcttcaacaaactaattagtctttttttgtcacccaaattctaaaatggtagtgtttacttggcag-
|||| |||| ||  | ||| | ||| ||||||||||  | || || || ||| | |||||||| || || ||||| ||||| |||||||||||||||||||||  ||       |||   | ||| ||||       |  ||||  ||||  | | |   | |      |   |    || |||  |  | || | ||  |  |  |||  | |   |   
AGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTCGAAACTTGACCTTGTTGGTGCCCATATAAATGTATTTACTGGTGAATGGACACAGAAGgtattaa-------ctttcat-tatctcagtg-----atagttt--tgaaactagatgttata------tcgcttgcgttgtgttgctgatatgcaaacgtcttgttgtagaatgaactac

upper sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G173868_T02 (Zea mays), 5'ss of exon 8
AGTTGCAAAGAATGCGGTGAGGGGACTATGGGCACGTCGTTCAAATCTCGACTTGGTTGGTGCTCACATCAATGTCTTTACAGGTGAATGGACACAGAAGgtaacaaaaaatggcttctgtatatgtcagaagaactacggtt-tgatgaactttgcttcaacaaactaattagtctttttttgtcacccaaattctaaaatggtagtgtttacttggcag
|||| |||| ||  | ||| | ||| ||||| ||||  | ||||| ||| |  | |||||||| || || ||||||||||| ||||||||||||||||||||        ||   ||| ||    ||   ||    ||  |        | | |    |||  ||  || ||   || | | | |||    | || |  |                     
AGTTACAAAAAAATCAGTGCGTGGAATATGGTCACGCAGATCAAAACTCAATCTTGTTGGTGCCCATATAAATGTCTTTACTGGTGAATGGACACAGAAGgtttggttttatcctttcagtggtagttttaatttttaaagcaactgctagcatcctctcattaa--tattttaactctgtatttcattatatttgtggagc-------------------

upper sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 7
AGTTGCAAAGAATGCGGTGAGGGGACTATGGGCACGTCGTTCAAATCTCGACTTGGTTGGTGCTCACATCAATGTCTTTACAGGTGAATGGACACAGAAGgtaacaaaaaatggcttctgtatatgtcagaagaactacggtttgatgaac-tttgcttcaacaaactaattagtctttttttgtcacccaaattctaaaatggtagtgtttacttggcag
|||| | |||||||| ||| | ||||| |||||||| |||||||| ||  || |||| |||||||| || ||||| |||||||||||||||||||| |||||| ||||  ||   ||    || |||   ||  | |||   |  |   || | | | |  | | ||  ||  || | | | |||       || ||  | |                   
AGTTACCAAGAATGCAGTGCGTGGACTTTGGGCACGGCGTTCAAAGCTTAACCTGGTCGGTGCTCATATTAATGTTTTTACAGGTGAATGGACACAAAAGgta-caaagtatatatt----atttgttgaaaata-tacatatacacatacatgtacatacatacacacatgtgtgtgtgtgtgtgtgtgtgatgctctactttct---------------

upper sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA20G35290.1 (Glycine max), 5'ss of exon 2
AGTTGCAAAGAATGCGGTGAGGGGACTATGGGCACGTCGTTCAAATCTCGACTTGGTTGGTGCTCACATCAATGTCTTTACAGGTGAATGGACACAGAAGgtaacaaaaaatggcttctgtatatgtcagaagaactacg-gtttgatgaactttgcttcaacaaactaattagtctttttttgtcacccaaattctaaaatggtagtgtttacttggcag
|||  | |||||||| ||| | ||||| |||||| | |||||||| ||  |  ||||||||| ||| || ||||| || ||||||||||||||||| ||||||   |  |      | | | | |||  |      |  | || | ||||  |||   | |      |  |  |  || |||  |    || |   |||| |                   
AGTCACCAAGAATGCAGTGTGTGGACTTTGGGCATGGCGTTCAAAGCTTAATCTGGTTGGTGGTCATATTAATGTTTTCACAGGTGAATGGACACAAAAGgtacagagtatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtaatgacatttttcttatttcttttgt-ggcattatttcttttttcagaga-taaatt-------------------

upper sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 9
AGTTGCAAAGAATGCGGTGAGGGGACTATGGGCACGTCGTTCAAATCTCGACTTGGTTGGTGCTCACATCAATGTCTTTACAGGTGAATGGACACAGAAGgtaacaaaaaatggcttctgtatatgtcagaagaactacggtttgatgaactttgcttcaacaaactaattagtctttttttgtcacccaaattctaaaatggtagtgtttacttggcag
|||| |||||||||| |||   ||| ||||||| || || ||||| ||  || | ||||||||||| |||||||| ||||||||||||||||||||||||||||||     |      || | |  |   |||  |     |||    |  | |     |   || |  |||||  |||    |||   || ||||  | |  |                
AGTTACAAAGAATGCAGTGCATGGATTATGGGCTCGCCGATCAAAGCTGAACCTAGTTGGTGCTCATATCAATGTTTTTACAGGTGAATGGACACAGAAGgtaacatttgttttaacatgaaaacattgtaagggccttctttt--ctatttctaagatagagaaatgcttagttatttaacatca--taatttctttattttt----------------