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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTACAAGCGGAGTTACGATGTGTGCACACAACTATATGAGAAAGAGTTATTGACCGAGAATTCATATCTTCACGTATATGGgtttgttgctttttcttgagagggtctacatacttattttattttgtttcagcagacaaggtgtatgcgtttgttgattaaatctgttaatcaaattgttgttttaatagctggcttctcttgagctaagttacataaaccagtattatatttctcattctggcattttgttag

Basic information

species Arabidopsis thaliana
transcript AT5G35910.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G35910.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA05G11200.1 (Glycine max), 5'ss of exon 2
GTCTACAAGCGGAGTTACGATGTGTGCACACAACTATATGAGAAAGAGTTATTGACCGAGAATTCATATCTTCACGTATATGGgtttgttg----ctttttcttgagagggtctacatact---tattttattttgtttcagcagacaa----ggtgtatgc-gtttgttgattaaatctgttaatcaaattgttgttttaatagctggcttctcttgagctaagttacataaaccagtattatatt---tctcattctggcattttgttag
|||||||| || ||||| ||||| ||||  || |||||||||||||| ||  |||| ||||| || ||||||||  |||||||||| ||      || ||  || |     | | ||| ||    |    |   |  |||| ||  |       || ||| | | ||  |  |   |    |  ||  ||  |  || || ||   |  ||  | |  |  |||   | |  ||  ||| | |         | |||   |  | |   |||
GTCTACAAACGCAGTTATGATGTTTGCATGCAGCTATATGAGAAAGAATTTCTGACAGAGAACTCCTATCTTCATATATATGGgttcgtcaatatctgttctttcattaattttgcattctatgcaagcaacaattgttcaccaagcttttttagtatatcctgattacttttctgactcttctatataaagggagtatttattaatttctgttttgcatgtaatgcataccaagaagtgtaaagcaaagcttaattactgtttctctatag

upper sequence: AT5G35910.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA17G24130.1 (Glycine max), 5'ss of exon 9
GTCTACAAGCGGAGTTACGATGTGTGCACACAACTATATGAGAAAGAGTTATTGACCGAGAATTCATATCTTCACGTATATGGgtttgt---tgctttttcttgagagggtctacatact-tatt--ttattttgtttcagcagacaaggtgtatgcgtttgttgattaaatctgttaatc----aaattgttgttttaatagctggcttctcttgagc---taagttacataaaccagtattatatt---tctcattctggcattttgttag
|||||||| || ||||| ||||| ||||  || ||||||||||||||  | ||||| ||||| || ||||||||  |||||||||| ||   |    ||  || |   | | | ||| || |           |  |||| ||  ||   | | ||  | | |||||||  | | | | ||    | ||    | |||| |   |   |||| ||  ||   |||   |    ||  ||| | | |       | |||   |  | |  ||||
GTCTACAAACGCAGTTATGATGTCTGCATTCAGCTATATGAGAAAGAACTTTTGACAGAGAACTCCTATCTTCATATATATGGgttcgtcaatagcattctttcattagttatgcattctatgccagcagcaattgttcaccaagcat--tttttgtatatcttgattacttttctgactcttctatataaagggtttatttattaagttctgttttgcatgtaatgcatgccaagaagtgtaaaacaaagcttaattactgtttctctttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064860|gb|DR360617.1|DR360617
EST:     CTATATGAGAAAGAGTTATTGNCCGAGAATTCATATCTTCACGTATANGG                         GCTTCAAGCAGNGGGCTTTAATGCAGCTCAACTTGCC
genomic: CTATATGAGAAAGAGTTATTGACCGAGAATTCATATCTTCACGTATATGGgtttgttgct ... attttgttagGCTTCAAGCAGCGGGCTTTAATGCAGCTCAACTTGCC