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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGCGATATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGgttctgtctaaaaaaccttgctctttaatgcctactacttgaagattttatttatattgcttctattttaagagttctttcctcgttcaaagttattattgctcttaagatgcattggtttcttctcag

Basic information

species Arabidopsis thaliana
transcript AT5G28900.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G28900.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 8
GCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGCGATATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGgttctgtctaaaaaaccttgctctttaatgcctactacttgaagattttatttatattgcttctattttaagagttctttcctcgtt--caaagttattattgctcttaagatgcattggtttcttctcag----------------------------------------------------
||||||||| |||||||||||| | || |||||||| ||||||||  ||||||| |||||||| |||||||| || ||||| || |||||||| || |||||| ||| |  |  || |    |||   |   |   | || |   |||  |   |   ||  |       | |   |||| ||   |  |  |   | | ||    | |   | ||||  ||| || | |                                                     
GCTGGATACAGATCACGATTTCTTAATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtt-tgtgtggattacttgttgcttctgtctttgagatttaactgtttc-tgacttcagcaacagaccctataccccttttctttctaacgcaagaagtgtttggttcagtgtccattcatttttttttatcagatcattttatagaagatgcagattctgacttgctttattattgtctcag

upper sequence: AT5G28900.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA20G36530.1 (Glycine max), 5'ss of exon 8
GCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGCGATATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGgttctgtctaaaaaaccttgctctttaatgcctactacttgaagattttatttatattgcttctattttaagagttctttcctcgtt--caaagttattattgctcttaagatgcattggtttcttctcag--------------------------------------------------
||||||||| |||||||||||| | || |||||||| ||||||||  ||||||| |||||||| |||||||| || ||||| || |||||||| || |||||| ||| |  |  || |    |||   |   |   | || ||  ||| ||   |   ||  |       | |   |||  ||   |  |  |   | | ||    | |   | |||    || |  | |                                                   
GCTGGATACAGATCACGATTTCTTTATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtt-tgtgtggattacttgttgcttctgtctttgagatttaaatgttt-atgacttcagcaacagaccctataccccttctctttctaacgcaagaagtgtttggttcagtgtccatccacttttgtttatcagatcatttattgaagtgcagattctgacttgcttcagtattgtctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116434984|gb|EG477576.1|EG477576
EST:     ATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAG                         GTTGCTAGGAAGTTCACTAGCAAAGTTGAAGGGAAGATGGGGTATGAAGAC
genomic: ATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGgttctgtcta ... ttcttctcagGTTGCTAGGAAGTTCACTAACAAAGTTGAAGGGAAGATGGGGTATGAGGAC
EST: gi|116435329|gb|EG477921.1|EG477921
EST:     ATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAG                         GTTGCTAGGAAGTTCACTAGCAAAGTTGAAGGGAAGATGGGGTATGAAGAC
genomic: ATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGgttctgtcta ... ttcttctcagGTTGCTAGGAAGTTCACTAACAAAGTTGAAGGGAAGATGGGGTATGAGGAC
EST: gi|125016152|gb|EL088421.1|EL088421
EST:     ATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAG                         GTTGCTAGGAAGTTCACTAACAA
genomic: ATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGgttctgtcta ... ttcttctcagGTTGCTAGGAAGTTCACTAACAA
EST: gi|164038356|gb|EL993532.1|EL993532
EST:     ACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAG                         GTTGCTAGGAAGTTCACTAGCAAAGTTGAAGGGAAGATGGGGTATGAAGAC
genomic: ACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGgttctgtcta ... ttcttctcagGTTGCTAGGAAGTTCACTAACAAAGTTGAAGGGAAGATGGGGTATGAGGAC
EST: gi|164209234|gb|ES063761.1|ES063761
EST:     CCGGATTGTCGACAGAATATTCTCCCAG                         GTTGCTAGGAAGTTCACTAGCAAAGTTGAAGGGAAGATGGGGTATGAAGAC
genomic: CCGGATTGTCGACAGAATATTCTCCCAGgttctgtcta ... ttcttctcagGTTGCTAGGAAGTTCACTAACAAAGTTGAAGGGAAGATGGGGTATGAGGAC
EST: gi|116435322|gb|EG477914.1|EG477914
EST:     ATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAG                         GTTGCTAGGAAGTTCACTAGCAAAGTTGAAGGGAAGATGGGGTATGAAGAC
genomic: ATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGgttctgtcta ... ttcttctcagGTTGCTAGGAAGTTCACTAACAAAGTTGAAGGGAAGATGGGGTATGAGGAC