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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCAAGTGCTTATGCTCGTCTATATGACTATGCACGTATTCGTAAGgtaaagtattgtctcaactcttgagtgtgaagtttagttacaaaagttgcagttttcaaggttatgcataaaaaattgcag

Basic information

species Arabidopsis thaliana
transcript AT5G26780.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 8
CTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCAAGTGCTTATGCTCGTCTATATGACTATGCACGTATTCGTAAGgtaaagtattgtctcaactcttgagtgtgaagt--ttagttacaaaagttgcagttttcaaggttatgcataaa--aaattgcag
 | || || |||||||| ||||| || || ||  | || ||||||||||||||||| ||||| ||||| ||||||||||  || || || ||||| || | |  |    | |  ||  ||   | |  | |  | |   | |  ||||     |  | |    | |   ||  |||||
ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaattttactgctcaatagtgcatgctgaatcttcaccttctgtaat--cagtcaaataattcacttgttatgcaatctgcag

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 8
CTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCAAGTGCTTATGCTCGTCTATATGACTATGCACGTATTCGTAAGgtaaagtat------tgtctcaactcttgagtgtgaagtttagt----tacaaaagttgcagttttcaaggttatgcataaaaaattgcag--
 | || || ||||| || ||||| || || ||| | || ||||| ||||| |||||||||||||| || ||||| ||||||||| |||| |||||||| |||      |     ||||   |  | | | ||||||     | ||    |     | || ||  ||||       || ||| |   
TTGGAGAAAAGTGCAGTACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaaattatatctgatacagaaacttaggtatttaatgtttagaacaattcagtcatgatgatattgaatcttatatgcttgaatttgtacag

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA14G36280.1 (Glycine max), 5'ss of exon 8
CTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCAAGTGCTTATGCTCGTCTATATGACTATGCACGTATTCGTAAGgtaaagtat------tgtctcaactcttgagtgtgaagtttagt----tacaaaagttgcagttttcaaggttatgcataaaaaattgcag--
 | || || ||||| |  ||||| || || ||| | || ||||| ||||| |||||||||||||| || ||||| ||||||||| |||| |||||||  |||      |     ||||   |  | | | ||||||     | ||    |    || || ||  || |       || ||| |   
TTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaatttatatctgatacagaaacttaggtatttaatgtttagaacaattcagtcatgatggtattgaatcttttatgcttgaatttgtatag

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 8
CTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCAAGTGCTTATGCTCGTCTATATGACTATGCACGTATTCGTAAGgtaaagtatt---gtctca---actcttgagtgtgaagtttagttacaaaagttgcagttttcaaggttat------gcataaaaaattgcag---------------------------------
 | || || ||||| |  || |||||||| ||||| |||||||| || |||||||| ||||| ||||| ||||| ||||||||||| || |||||||   |||   || | |   || ||   | ||  |   |||| |||| | |     | |  |   ||||      |  ||||   ||  |                                  
TTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAGgtaagagattttggtttgagggacactactgcgttcatcatagtcacaacattaaagttctctattattattttaaagtctaaatgtttagaaatcgtgtaactttaaattcttaggatttaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125303509|gb|EL317594.1|EL317594
EST:     CGGGTGCAAGTGCTTATGCTCGTCTATATGACTATGCACGTATTCGTAAG                         GTCTGTAACAAGCAAAAGG
genomic: CGGGTGCAAGTGCTTATGCTCGTCTATATGACTATGCACGTATTCGTAAGgtaaagtatt ... aaaattgcagGTCTGTAACAAGCAAAAGG