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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTACTTTTTGAACTAATATGGAGAGATTACTTCAGGTTTCTTTCAATTAAGTGTGGAAACTCACTTTTTCATCTAGgtaactatgctttcgaattaaagctcaatgcaatgttgttacagtgaactttttaaatagcgcattctcttcgtag

Basic information

species Arabidopsis thaliana
transcript AT5G24850.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G24850.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv04s0008g02670.t01 (Vitis vinifera), 5'ss of exon 8
GGTACTTTTTGAACTAATATGGAGAGATTACTTCAGGTTTCTTTCAATTAAGTGTGGAAACTCACTTTTTCATCTAGgtaacta----tgctttcgaattaaagctcaat------------gcaatgttgttacagtg-----aactttttaaatagcgcattctcttcgtag---
|||  | |||||| | ||||||||||||||||||||||| || ||| |||| |   |||| || |||||||||||||||||  |    |   |      |||| |||||             ||||| ||  || | |      ||      ||| || || | | |     |    
GGTGTTGTTTGAATTGATATGGAGAGATTACTTCAGGTTCCTGTCAGTTAAATACAGAAATTCTCTTTTTCATCTAGgtaaagaaagttatctgtttgctaaacctcaaacctttttgataggcaatattagtataatattaacaagcgccaaaaaagagcttacacaggacatata