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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTTGGTGTGGATAAACAAAAGATCGTTGAAGAGATCACTCGTGCATATGCCCATCAGATATTTGTTGATGGGTTTTTTAATGGCGACCCTCATCCAGgtatggtctgaaacatgatcgtttttttggagttcgccaatttttatctgtcttgtaactaccatgctgcttaggcatagaatttattctaatacaagtatacgtctactctgttttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G24810.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G24810.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G140917_T01 (Zea mays), 5'ss of exon 9
GCTTTTGGTGTGGATAAACAAAAGATCGTTGAAGAGATCACTCGTGCATATGCCCATCAGATATTTGTTGATGGGTTTTTTAATGGCGACCCTCATCCAGgtatggtctgaaacatgatcgtttttttggagttcgccaatttttatctgtcttgtaactaccatgctgcttaggcatagaatttattctaatacaagtatacgtctactctgttttgcag
|| | |||||| || || |||||  | || |||||||| || |||||||| || ||||| ||||   ||||||| || ||||| |||||||||||||| |||||    |  || ||  || ||||      | |        || | || |||| |          ||  ||   |  | | || ||||  ||||  || | | | |  ||| || || ||
GCATATGGTGTTGACAAGCAAAAACTGGTCGAAGAGATAACCCGTGCATACGCTCATCAAATATACATTGATGGCTTCTTTAACGGCGACCCTCATCCTGgtat---ttagaatatattcattttgagaaggctt-----cgttcacctttcttct----------ctaattgatcgcaca-ttaattc--atacttgtgtgcattt-ttctcttatgtag

upper sequence: AT5G24810.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA17G24420.1 (Glycine max), 5'ss of exon 7
GCTTTTGGTGTGGATAAACAAAAGATCGTTGAAGAGATCACTCGTGCATATGCCCATCAGATATTTGTTGATGGGTTTTTTAATGGCGACCCTCATCCAGgtatggtctgaaac-atgatcgtttttttg---gagttcgccaat--ttttatctgtcttgtaactacc-----atgctgcttaggcatagaattta----ttctaatacaagtatacgtctac--tctgttttgcag---------------------
|||| ||| || |||||||||||| | ||||| ||||| |||||||| ||||||||||| |||| ||||||||| ||||| || || || |||||||||||||   |||    | | | | ||  || ||   |  |  || |||  | ||||     ||  || |        |  ||   || | | |   | ||    |||| ||      ||  |   ||   || |||||                        
GCTTATGGAGTAGATAAACAAAAGCTTGTTGAGGAGATTACTCGTGCCTATGCCCATCAAATATATGTTGATGGATTTTTCAACGGTGATCCTCATCCAGgtactctctccctctacgtttgtgcttgtgtttgcatgtgcaaatgatattatggaattttcaatttgttgtagaaactatataagaacaatctgtaacacttctgattattccatgtgctcacgaactattttggctctcttaatggaatcatcacag

upper sequence: AT5G24810.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA14G20110.1 (Glycine max), 5'ss of exon 8
GCTTTTGGTGTGGATAAACAAAAGATCGTTGAAGAGATCACTCGTGCATATGCCCATCAGATATTTGTTGATGGGTTTTTTAATGGCGACCCTCATCCAGgtatggtctgaaacatgatcgtttttttggagttcgccaatttttatctgtct--tgtaac--tacca--tgctgcttaggcatagaatttattctaatacaagta-tacgtctactctgttttgcag
|||| ||| || |||||||||||| | ||||| ||||| |||||||| |||||||| || |||| | ||||||| ||||| ||||| || |||||||||||||   |||    |     |  |   || | | |     ||   | |   | |  ||||||  | ||   || | | |  ||  |  |  |||| |    |   || |      |   |         
GCTTATGGAGTAGATAAACAAAAGCTTGTTGAGGAGATTACTCGTGCCTATGCCCACCAAATATATATTGATGGATTTTTCAATGGTGATCCTCATCCAGgtactctctctctctctccctctacgtttgtgcttatgtatgcatgtgcatatgatgtaacacttccgattgttccatgtgctcatgaactattttggctctcttactggaatcatcatag-------

upper sequence: AT5G24810.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv04s0008g02740.t01 (Vitis vinifera), 5'ss of exon 7
GCTTTTGGTGTGGATAAACAAAAGATCGTTGAAGAGATCACTCGTGCATATGCCCATCAGATATTTGTTGATGGGTTTTTTAATGGCGACCCTCATCCAGgta-tggtctgaaacatgatcgtttttttggagttcgccaatttttatc----tgt-cttgtaactaccatgctgct-taggcatagaatttattctaatacaagtatacgtctactctgttttgcag
||||||||| | || ||||||||| | |||||||| || ||||||||||||||||| ||||| |  |||||||| ||||||||||| ||||| || || |||| |  |        |  ||   |  ||||   ||      ||| ||     |||  || |   |    ||   ||  || |||||| ||  |||| ||                            
GCTTTTGGTATTGACAAACAAAAGCTTGTTGAAGAAATAACTCGTGCATATGCCCACCAGATTTACGTTGATGGATTTTTTAATGGTGACCCCCACCCTGgtactcattctttctctcctccactgcttggtcctcaatctctttcattgttttgtgtttctggttgaattgtaactacagtcatagagttatttctgat----------------------------