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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGCTGTTGAGCTGTCAAGGGTAAGTGGGAGTGCTCCACAATTGATTACAATTGGGGCTGACAAGACATTGGCCATATGGGATACAATGACATTTAAGgtaatggtgtatctcatgtatggatttttcatattttcccgatctcatttattaacatgcatatctacttttattctacag

Basic information

species Arabidopsis thaliana
transcript AT5G24710.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G24710.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os01g46510.2 (Oryza sativa), 5'ss of exon 8
GGTGGCTGTTGAGCTGTCAAGGGTAAGTGGGAGTGCTCCACAATTGATTACAATTGGGGCTGACAAGACATTGGCCATATGGGATACAATGACATTTAAGgtaatggtgtatctcatgtatggatttttcatattttcccgatctcatttattaac-atgcatatctacttttattctacag
 || || ||||| || ||| ||||||  || |||||||||||| | |||||||| ||||||||||| || || ||||||||||||||  | ||||||||||||          |   || ||  | | |  | ||||    || | |   |      |||||     |  | | || | |||
AGTTGCAGTTGAACTTTCACGGGTAATGGGAAGTGCTCCACAACTCATTACAATAGGGGCTGACAAAACTTTAGCCATATGGGATACTGTTACATTTAAGgtatactcactatttccgtgtgattgtattttttttttgttatttaaggaagagcttatgcagtagcatatcttttgtgcag

upper sequence: AT5G24710.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G000177_T01 (Zea mays), 5'ss of exon 8
GGTGGCTGTTGAGCTGTCAAGGGTAAGTGGGAGTGCTCCACAATTGATTACAATTGGGGCTGACAAGACATTGGCCATATGGGATACAATGACATTTAAGgtaatggtgtatct-catgtatggatttttcatattttcccgatctcatttattaacatgcatatctacttttattctacag
 || || ||||| || |||||||| |  ||||||||||||||  | |||||||| |||||||| || || || ||||||||||||||  | || || |||||| |  | ||  |   || ||| | || |  |||||     || |||  ||  | | |  |     || |||  |   |||
AGTTGCAGTTGAACTTTCAAGGGTGATGGGGAGTGCTCCACAGCTCATTACAATAGGGGCTGATAAAACTTTAGCCATATGGGATACTGTTACTTTCAAGgtacttatataaatatttgcatgaagttatattatttatt--atttcaagtag-agcttaaagtaacacatttgctgctcag