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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGATATGGAGTGCTTCTCATACTTGAACCGTGCTCTTGAGAGCTCATTATCTCCGATAGTGATATTTGCAACAAATAGAGGTGTTTGCAACGTAAGgtgagaagagcgctagaccttgatagacattttcctttggaaatcttgtgagtttttgttaacttggtactgtgatttactttatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G22330.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22330.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os01g62040.1 (Oryza sativa), 5'ss of exon 8
TGCTTGATATGGAGTGCTTCTCATACTTGAACCGTGCTCTTGAGAGCTCATTATCTCCGATAGTGATATTTGCAACAAATAGAGGTGTTTGCAACGTAAGgtgagaagagcgctagac--cttgatagacattttc-ctttgga----------aatcttgtgagtttttgttaacttggtactgtgatttactttatttgcag-------------------------------
|||| ||||| || |||||||| ||  | || |||||||| |||||| ||||||| || || |||||| |||| |||||||||||  | || || ||||||| |   |   | |  ||  || ||   ||  | || | ||| |          |||  || |  | |  |||    |  |||| || |        ||  ||                                
TGCTAGATATTGAATGCTTCTCTTATCTTAATCGTGCTCTGGAGAGCCCATTATCACCAATTGTGATACTTGCGACAAATAGAGGAATATGTAATGTAAGgtaaacggtttgatttaccgctcgaagcactctgtcacattgcagtaccagagtaatactgcgtctatcagtttgtctattactatgctccttaaagttaacaagtcttttatatacttgtgtgaatgtgtccag

upper sequence: AT5G22330.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA08G21830.1 (Glycine max), 5'ss of exon 8
TGCTTGATATGGAGTGCTTCTCATACTTGAACCGTGCTCTTGAGAGCTCATTATCTCCGATAGTGATATTTGCAACAAATAGAGGTGTTTGCAACGTAAGgtgagaagagc---gctagaccttgatagacattttcctttgg----aaatcttgtgagtttttgttaacttggtactgtgatttact-ttatttgcag-
|||| ||||||||||| || || || ||||| |||||| | ||||||||  ||||||| ||||| || ||||| || ||||||||  | ||||| |||||||  ||| |       |   | || | |||  ||||  |   |    |||| |    |  |    | ||     | |||||||| |    |  |      
TGCTAGATATGGAGTGTTTTTCGTATTTGAATCGTGCTTTAGAGAGCTCCCTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCAATGTAAGgtatgaataaactaattttgcttttaaagaagttttggtccagtggtaaatttgaataaatcaaatgaatgcaatgctgtgattgatagctggtcatttt

upper sequence: AT5G22330.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv06s0004g02910.t01 (Vitis vinifera), 5'ss of exon 8
TGCTTGATATGGAGTGCTTCTCATACTTGAACCGTGCTCTTGAGAGCTCATTATCTCCGATAGTGATATTTGCAACAAATAGAGGTGTTTGCAACGTAAGgtgagaagagcgctagaccttgatagacattttcctt---------tggaaatcttgtgagtttttgttaacttggtactgtgatttactttatttgcag-
|||| ||||||||||| || ||||| ||||| |||||||| ||||||||| | ||||| ||||| || || || |||||||| ||  | || || |||||||  |     |           ||   ||  |  |||         || |||  ||     | |||  ||||    | | ||  |||  ||| |||     
TGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAGAGCTCACTGTCTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTAATGTAAGgtatggcattctacctgtgaaaatgaccaaataacttggaataggatgaaaaaattacctatcttttctaacc-attgcagtttttttttttcttttggaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116443984|gb|EG486576.1|EG486576
EST:     TTATCTCCGATAGTGATATTTGCAACAAATAGAGGTGTTTGCAACGTAAG                         AGGGACTGATATGCCCAGCCCCCATGGAGTCCCTATTGATCTATTAGATCG
genomic: TTATCTCCGATAGTGATATTTGCAACAAATAGAGGTGTTTGCAACGTAAGgtgagaagag ... ttatttgcagAGGGACTGATATGCCCAGCCCCCATGGAGTCCCTATTGATCTATTAGATCG
EST: gi|164033842|gb|ES152958.1|ES152958
EST:     TGTTTGCAACGTAAG                         AGGGACTGATATGTCCCAGTCCCCATGGAGTCCCTATTGATCTATTAGATC
genomic: TGTTTGCAACGTAAGgtgagaagag ... ttatttgcagAGGGACTGATATG-CCCAGCCCCCATGGAGTCCCTATTGATCTATTAGATC