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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAAGCTTAACCTTCCTGCTCTTCCAACAACTACAATTGGATCTTTTCCTCAGACCACAGATCTCAGACGGATACGCAGGGAATTCAAGGCCAAAAAgtaggcctatctaatccagtgatgtatctgaaatattctaacatatcattatataaatactgatgtatacgctgcatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G20980.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G20980.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA13G15140.2 (Glycine max), 5'ss of exon 8
AGAAGAAGCTTAACCTTCCTGCTCTTCCAACAACTACAATTGGATCTTTTCCTCAGACCACAGATCTCAGACGGATACGCAGGGAATTCAAGGCCAAAAAgtaggccta----tctaatccagtgatgtatctgaaat------attctaacatatcattatataaatactgatgtatacgctgcatttgcag
||||||| || || ||||||| ||||||||||||||||||||||||||| ||||| ||  | ||||| ||| |  | ||| | ||||||||||| || ||||  |  |       | |||   ||     |   ||||      ||| | |||  ||   |||||||     || | |   ||   |    ||
AGAAGAAACTGAATCTTCCTGTTCTTCCAACAACTACAATTGGATCTTTCCCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAAgtgagtatgaagtcttcatcttctgtcaccttccaaatccaatgattattacagttcgacatataaactgctatatgtttactatgtgaatag

upper sequence: AT5G20980.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA04G30350.1 (Glycine max), 5'ss of exon 8
AGAAGAAGCTTAACCTTCCTGCTCTTCCAACAACTACAATTGGATCTTTTCCTCAGACCACAGATCTCAGACGGATACGCAGGGAATTCAAGGCCAAAAAgtaggccta----tctaatccagtgatgtatctgaaat-----attctaacatatcattatataaatactgatgtatacgctgcatttgcag
|||||||  | || ||| ||| ||||||||||||||||||||||||||| ||||| ||  | ||||| ||| |  | ||  | ||||||||||| || ||||  |  |     | | |||   ||     |   |||      ||| | |||  |    |||||||     |  | |   ||   |    ||
AGAAGAAATTGAATCTTTCTGTTCTTCCAACAACTACAATTGGATCTTTCCCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAGGCTAACAAgtgagtatgaagttttcatcttctgtcacctgccaaaccaatgattattacagtttgacatataaactgctacatgtttactatgtgaatag

upper sequence: AT5G20980.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: EFJ28889 (Selaginella moellendorffii), 5'ss of exon 7
AGAAGAAGCTTAACCTTCCTGCTCTTCCAACAACTACAATTGGATCTTTTCCTCAGACCACAGATCTCAGACGGATACGCAGGGAATTCAAGGCCAAAAAgtaggccta---tctaatccagtgatgtatctgaaatattctaacatatcattatataaatactgatgtatacgctgcatttgcag
| ||| |  | || ||||||  ||| ||||||||||||||||||||||| ||||||||  | || ||  | ||  | ||  | ||  | |||  ||| ||||| |   |   | | |  |||   | ||||| |   || |   |||  | |   || |                           
AAAAGCACTTAAAGCTTCCTATTCTGCCAACAACTACAATTGGATCTTTCCCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAAgtaagtgaagacttttagacaggattctatcttatgcatccgtgcat-ccgtgtgatcag--------------------------