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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCCGTACATTTGTTGCTGATGGCGGTGAATGCTTGATAGCTCAAAGTTACGCCAAAAATATGGGACTTTATGGGGAGCGTGTTGGTGCCCTTAGCATTgtaaggaaccaaacttctcaatttcttattcgcttctattcatttgacattatggttagtcaaaaagttcatctaatggatagtacaagaatacagtattcaaaaattgcatctaatctgtgtgatataatgtgaag

Basic information

species Arabidopsis thaliana
transcript AT5G19550.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19550.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: EFJ09053 (Selaginella moellendorffii), 5'ss of exon 8
TGTCCGTACATTTGTTGCTGATGGCGGTGAATGCTTGATAGCTCAAAGTTACGCCAAAAATATGGGACTTTATGGGGAGCGTGTTGGTGCCCTTAGCATTgtaaggaaccaaacttctcaatttcttattcgcttctattcatttgacattatggttagtcaaaaagttcatctaatggatagtacaagaatacagtattcaaaaattgcatctaatctgtgtgatataatgtgaag
 || || || ||||| ||||||||||| || ||||| || |||||||| |  || |||||  ||||||||||||| || || ||||| || || |||||||||||  |  ||  |   |    |  |    |||  |||  | ||    ||  |                                                                                   
GGTTCGAACCTTTGTAGCTGATGGCGGAGAGTGCTTCATTGCTCAAAGCTTTGCTAAAAACTTGGGACTTTATGGTGAACGCGTTGGAGCTCTCAGCATTgtaagtta--aaggtagcctgacttatggaggctgatatcaagtttcttttcag-----------------------------------------------------------------------------------

upper sequence: AT5G19550.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: EFJ08853 (Selaginella moellendorffii), 5'ss of exon 8
TGTCCGTACATTTGTTGCTGATGGCGGTGAATGCTTGATAGCTCAAAGTTACGCCAAAAATATGGGACTTTATGGGGAGCGTGTTGGTGCCCTTAGCATTgtaaggaaccaaacttctcaatttcttattcgcttctattcatttgacattatggttagtcaaaaagttcatctaatggatagtacaagaatacagtattcaaaaattgcatctaatctgtgtgatataatgtgaag
 || || || ||||| ||||||||||| || ||||| || |||||||| |  || ||||| |||||||||||||| || || ||||| || || |||||||||||     |     |   | || |     |||  |||  | ||    ||  |                                                                                   
GGTTCGAACCTTTGTAGCTGATGGCGGAGAGTGCTTCATTGCTCAAAGCTTTGCTAAAAACATGGGACTTTATGGTGAACGCGTTGGAGCTCTCAGCATTgtaagtttaaaggtagcctgacttatggag-gctgatatcaagtttcttttcag-----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116442567|gb|EG485159.1|EG485159
EST:     ACGCCAAAAATATGGGACTTTATGGGGAGCGTGTTGGTGCCCTTAGCATT                         GTCTGCAAGTCAGCAGATGTGGCTAGTAAGGTTGAGAGCCAGGTGAAGCTT
genomic: ACGCCAAAAATATGGGACTTTATGGGGAGCGTGTTGGTGCCCTTAGCATTgtaaggaacc ... taatgtgaagGTCTGCAAGTCAGCAGATGTGGCTAGTAAGGTTGAGAGCCAGGTGAAGCTT
EST: gi|124998809|gb|EL071078.1|EL071078
EST:     ACGCCAAAAATATGGGACTTTATGGGGAGCGTGTTGGTGCCCTTAGCATT                         GTCTGCAAGTCAGCAGATGTGGCTAGTAAGGTTG
genomic: ACGCCAAAAATATGGGACTTTATGGGGAGCGTGTTGGTGCCCTTAGCATTgtaaggaacc ... taatgtgaagGTCTGCAAGTCAGCAGATGTGGCTAGTAAGGTTG