1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATGTGTGAGAAGACAAACAAGCATCAAGTACTACTTGCCTTGTTAGAGTCTGATGCACCTGAATCAGCTATCATTTTTGTCGGCGAGCAGgtattggaaacctctatttccctttttacttcagttaatctaaccatttaacactattttctgattcttcttttcag
species | Arabidopsis thaliana |
transcript | AT5G19210.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCGGCGAGCAG TCTGAGAAGTCAAAAAAGGCTGGAAATGATCCATCTACAACTCTACTAATGEST: gi|164070803|gb|ES123363.1|ES123363
genomic: TCGGCGAGCAGgtattggaaa ... ttcttttcagTCTGAGAAGTCAAAAAAGGCTGGAAATGATCCATCTACAACTCTACTAATG
EST: TCGGCGAGCAG TCTGAGAAGTCAAAAAAGGCTGGAAATGATCCATCTACAACTCTACTAATGEST: gi|164210830|gb|ES169353.1|ES169353
genomic: TCGGCGAGCAGgtattggaaa ... ttcttttcagTCTGAGAAGTCAAAAAAGGCTGGAAATGATCCATCTACAACTCTACTAATG
EST: TCGGCGAGCAG TCTGAGAAGTCAAAAAAGGCTGGAAATGATCCATCTACAACTCTACTAATG
genomic: TCGGCGAGCAGgtattggaaa ... ttcttttcagTCTGAGAAGTCAAAAAAGGCTGGAAATGATCCATCTACAACTCTACTAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGTGAGAAGACAAACAAGCATCAAGTACTACTTGCCTTGTTAGAGTCTGATGCACCTGAATCAGCTATCATTTTTGTCGGCGAGCAGgtattggaaacctctatttccctttttacttcagttaatctaaccatttaacactattttctgattcttcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG