Sequence
atgc intronic sequence ATGC exonic sequenceGTTTGTCCACGGAGATGTGAAGCCGGAAAACTTTTTACTCGGTCAACCAGGAACAGCAGATGAGAAAAAACTCTACCTTATCGATCTTGGTCTGGgtgagtgtattcttatgaagaactttattctctctgatgctgcaatattttatgagatatgtaacttggtacttctctttgatgttggcattaatgttcacataatcttctgttgtttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G18190.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA16G04580.1 (Glycine max), 5'ss of exon 8
GTTTGTCCACGGAGATGTGAAGCCGGAAAACTTTTTACTCGGTCAACCAGGAACAGCAGATGAGAAAAAACTCTACCTTATCGATCTTGGTCTGGgtgagtgtattcttatgaagaactttattctctctgatgctgcaatattttatgagatatgtaacttggtactt--ctctttgatgttggcattaatgttcacataatcttctgttgtttcag
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GTTTGTGCATGGAGATGTGAAACCTGAAAACTTTTTGCTTGGTCAACCTGGATCAGCTGAAGATAAGAAGTTATATCTTATTGATCTTGGTCTGGgtatgt-tgtccattcaaacca----gttgttgtttatgttgcgtttaactttctgcctcaccacttggtacatgatattttcatgact-tattaatgtccatatggcatgcattgtcttcag
upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 8
GTTTGTCCACGGAGATGTGAAGCCGGAAAACTTTTTACTCGGTCAACCAGGAACAGCAGATGAGAAAAAACTCTACCTTATCGATCTTGGTCTGGgtgagtgtattcttatgaagaactttattctctctgatgctgcaatattttatgagatatgtaacttggtacttctctttgatgttggcattaatgttcacataatcttctgttgtttcag
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GTTTGTGCATGGAGATGTGAAGCCAGAGAACTTTTTACTTGGTCAACCTGGAACTGCTGATGAGAAGAAGCTATTTCTTATTGATCTTGGTTTGGgtatgc-catccttcctcaagtctttcacctgtcgtgtcatg---tcctctgcgtggtgtgaaccatagtattgtttcaccatgt--gaaacaatgtgcatg-agtg--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125258884|gb|EL272969.1|EL272969EST: CTACCTTATCGATCTTGGTCTGG CATCTAAATGGAAAGATTCACACTCAGGCCAGCATGTTGAATATGATCAAA
genomic: CTACCTTATCGATCTTGGTCTGGgtgagtgtat ... gttgtttcagCATCTAAATGGAAAGATTCACACTCAGGCCAGCATGTTGAATATGATCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTGTCCACGGAGATGTGAAGCCGGAAAACTTTTTACTCGGTCAACCAGGAACAGCAGATGAGAAAAAACTCTACCTTATCGATCTTGGTCTGGgtgagtgtattcttatgaagaactttattctctctgatgctgcaatattttatgagatatgtaacttggtacttctctttgatgttggcattaatgttcacataatcttctgttgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG